[Bioc-devel] SSH Issues

Chris Eeles chr|@topher@ee|e@ @end|ng |rom out|ook@com
Wed Jun 3 19:26:33 CEST 2020

Hi Nitesh,

I did not change the username on purpose, maybe it happened because I submitted CoreGx under my GitHub account with Benjamin listed as the maintainer?

Anyway, all of our package on Bioconductor are:

  *   genefu
  *   PharmacoGx
  *   predictionnet
  *   survcomp
  *   Xeva
  *   consensusOV
  *   CoreGx

Benjamin’s GitHub username is bhaibeka, if I just change the username back will that work?

Sorry for an inconvenience.


From: Nitesh Turaga <nturaga.bioc using gmail.com>
Sent: June 3, 2020 1:15 PM
To: Chris Eeles <christopher.eeles using outlook.com>
Cc: bioc-devel using r-project.org; Haibe-Kains, Benjamin <Benjamin.Haibe-Kains using uhnresearch.ca>
Subject: Re: [Bioc-devel] SSH Issues

Hi Chris,

I just checked and it seems you have changed the username in Benjamin’s account. Is that correct?

So, the mapping is lost for all the packages Benjamin had, and your username as well has lost all of it’s mapping on Git repo.

Can you tell me what packages you need access to? We should keep Benjamin’s account at his ‘utoronto.ca<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Futoronto.ca%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222071484&sdata=oy5bAg2L8ZyLGTYEhLoVRV0iH8Oto3iCnTtsdVEEZR4%3D&reserved=0>’ separate from yours.

I’ll create an account for you and give you access. I’ll have to fix benjamin’s account and yours as well/



On Jun 3, 2020, at 12:56 PM, Chris Eeles <christopher.eeles using outlook.com<mailto:christopher.eeles using outlook.com>> wrote:

Hi Nitesh,

I had a look at the packages I have access to and it seems that the Bioconductor credentials account I logged into only has access to the Xeva repo. I am using ‘benjamin.haibe.kains using utoronto.ca<mailto:benjamin.haibe.kains using utoronto.ca>', the email listed as maintainer for all of the BHKLAB Bioconductor submissions.

Which email would the credentials be managed if not the maintainers’?

I tried activating an account using my GitHub email but it says I am not the maintainer of any packages.

Are you able to see which email the credentials for PharmacoGx and CoreGx are managed under? If not how can I manage access to these repos?

Thanks for your support.


From: Nitesh Turaga <nturaga.bioc using gmail.com<mailto:nturaga.bioc using gmail.com>>
Sent: June 3, 2020 11:05 AM
To: Chris Eeles <christopher.eeles using outlook.com<mailto:christopher.eeles using outlook.com>>
Cc: Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] SSH Issues

Hi Chris,

http://bioconductor.org/developers/how-to/git/faq/<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Ffaq%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222071484&sdata=A7Zxee0BmsukYqKMoaueyryPUre%2F4j6yqZW4ermkaNo%3D&reserved=0> Take a look at #13 and #14.

I’ll be able to better help you with more information.



On Jun 3, 2020, at 10:49 AM, Chris Eeles <christopher.eeles using outlook.com<mailto:christopher.eeles using outlook.com>> wrote:

Hello Bioconductor team,

I am having issues pushing updates to the development branch of the CoreGx package.

When I try to push to upstream I get:
"FATAL: W any packages/CoreGx gangeshberiuhn DENIED by fallthru
(or you mis-spelled the reponame)
Fatal: Could not read from remote repository.

Please make sure you have the correct access rights
on the repository and the repository exists."

I have access to our Bioconductor credentials account and have confirmed that my public key is registered there, so I am not sure what is going on. I also tried removing and re-adding upstream.

Any help would be appreciated.

Christopher Eeles
Software Developer
BHK Laboratory<http://www.bhklab.ca/<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.bhklab.ca%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222081479&sdata=JFmkXRxuxJJG1FE%2F0N8Gxq96ocipbuhF1gg0vTw42ic%3D&reserved=0>>
Princess Margaret Cancer Centre<https://www.pmgenomics.ca/pmgenomics/<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.pmgenomics.ca%2Fpmgenomics%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222081479&sdata=LnvKW%2Bl38rc88zsHldvPPPnkDmqOLvlp9fAiG0PWRRQ%3D&reserved=0>>
University Health Network<http://www.uhn.ca/<https://nam11.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.uhn.ca%2F&data=02%7C01%7C%7C27cb7946457d4b13907108d807e1a694%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637268013222081479&sdata=08gO6fz73rMPzceX0dlITunPHbeZnz8LsTzyQKCVToc%3D&reserved=0>>

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