[Bioc-devel] d3heatmap dependency error

[S Manimaran]

Thank you, Sean!

Best,
Mani

From: Sean Davis <seandavi using gmail.com>
Sent: Sunday, July 12, 2020 10:48 AM
To: S Manimaran <manimaran_1975 using hotmail.com>
Cc: bioc-devel using r-project.org
Subject: Re: [Bioc-devel] d3heatmap dependency error

There are a number of alternatives that might suit your needs for replacing d3heatmap functionality. For example:

https://plotly.com/r/heatmaps/
https://CRAN.R-project.org/package=heatmaply<https://cran.r-project.org/package=heatmaply>

Sean


On Sat, Jul 11, 2020 at 9:22 PM S Manimaran <manimaran_1975 using hotmail.com<mailto:manimaran_1975 using hotmail.com>> wrote:
Hi,

I have a package that depends on d3heatmap. Apparently d3heatmap is no longer maintained and removed from CRAN repository.

Now, I am getting the following error when installing my package.
ERROR: dependency 'd3heatmap' is not available

https://cran.r-project.org/web/packages/d3heatmap/index.html
Package 'd3heatmap' was removed from the CRAN repository.
Formerly available versions can be obtained from the archive.
https://cran.r-project.org/src/contrib/Archive/d3heatmap/

I am still able to install the last version from the archive.

require(devtools)
install_version("d3heatmap", version = "0.6.1.2")

Is there a way to make the Bioconductor use the archived version without giving the error? Or is the only solution is to rewrite my package without d3heatmap? Or is there an easy alternative to d3heatmap?

Thanks,
Mani

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--
Sean Davis, MD, PhD
Center for Cancer Research
National Cancer Institute
National Institutes of Health
Bethesda, MD 20892
https://seandavi.github.io/
https://twitter.com/seandavis12

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