[Bioc-devel] Error unable to find image

[Martin Morgan]

This seems to be a problem with a recent change to knitr

  https://github.com/Bioconductor/BiocStyle/issues/71
  https://github.com/yihui/knitr/issues/1797

Please follow these issues; it looks like it is fixed in the github repository, but needs to be made available in CRAN for this to be fixed on our build systems.

Martin

On 1/20/20, 12:00 PM, "Bioc-devel on behalf of Zach Shao" <bioc-devel-bounces using r-project.org on behalf of zach.shao using gmail.com> wrote:

    Hello,
    
    Not sure what to make of this error
    
    with building the vingette by bioconductor.
    
    The figures are all there.
    
    Did something change with knitr?
    
    Thank you.
    
    
    Zach
    
    ##############################################################################
    ##############################################################################
    ###
    ### Running command:
    ###
    ###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build
    --keep-empty-dirs --no-resave-data ERSSA
    ###
    ##############################################################################
    ##############################################################################
    
    
    * checking for file ‘ERSSA/DESCRIPTION’ ... OK
    * preparing ‘ERSSA’:
    * checking DESCRIPTION meta-information ... OK
    * installing the package to build vignettes
    * creating vignettes ... ERROR
    --- re-building ‘ERSSA.Rmd’ using rmarkdown
    Quitting from lines 45-46 (ERSSA.Rmd)
    Error: processing vignette 'ERSSA.Rmd' failed with diagnostics:
    Magick: unable to open image
    `/tmp/Rtmp9aQlKg/Rbuild6d1427846a56/ERSSA/vignettes/ERSSA_files/figure-html/unnamed-chunk-2-1.png':
    No such file or directory @ error/blob.c/OpenBlob/2701
    --- failed re-building ‘ERSSA.Rmd’
    
    SUMMARY: processing the following file failed:
      ‘ERSSA.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
    
    	[[alternative HTML version deleted]]
    
    _______________________________________________
    Bioc-devel using r-project.org mailing list
    https://stat.ethz.ch/mailman/listinfo/bioc-devel