[Bioc-devel] DeMixT issue

[py11]

Hi Nitesh,

Thank you very much for detailed explanation. Since there is a major  
change in our package, we decided to bump version from 1.3.1 to 1.5.0  
under devel branch. I did push repository from local machine into  
bioconductor from 1.3.1 --> 1.4.0 and the second try was from 1.3.1  
--> 1.5.0; but both of these two 'push' have been rejected with error:  
Illegal version bump from '1.3.1' to '1.4.0' and Illegal version bump  
from '1.3.1' to '1.5.0'.

However, my last try was from 1.3.1 --> 1.3.2 and it succeed.  I just  
double checked all the files in updatedremote/upstream/master has been  
updated.

I apologize for making it inconvenience since I just took over the job  
to maintain the package, and thanks again for the help.

Best,
Peng

Quoting "Turaga, Nitesh" <Nitesh.Turaga using roswellpark.org>:

> Hi Peng,
>
> I was looking through your version bumps, and it looks a little  
> off-track I have to say. The version bumps you should have in your  
> repository should be following the order(from the commit below)  
> should be 1.3.0 --> 1.3.1 --> 1.3.2 and so on.
>
> commit c358f5e7d8564423fb60abea7024b01068046ea8
> Author: Nitesh Turaga <nitesh.turaga using gmail.com>​
> Date:   2019-10-29 13:43:32 -0400​
> ​
>     bump x.y.z version to odd y after creation of RELEASE_3_10 branch​
> ​
> diff --git a/DESCRIPTION b/DESCRIPTION​
> index c922ad7..8fff467 100644​
> --- a/DESCRIPTION​
> +++ b/DESCRIPTION​
> @@ -2,7 +2,7 @@ Package: DeMixT​
>  Title: Cell type-specific deconvolution of heterogeneous tumor samples with​
>          two or three components using expression data from RNAseq​
>          or microarray platforms​
> -Version: 1.2.0​
> +Version: 1.3.0
>
>
> But it seems like this order has been lost somehow and you started  
> with 1.4.0 and 1.5.0. I'm actually surprised you were able to push  
> up these changes to the repository as the git hook should have  
> prevented you from making 1.3.0 --> 1.4.0. An important question is,  
> did you "push"  your commits to the Bioconductor git repository  
> after accumulating multiple commits on your local machine?
>
> This commit should have been declined by the hook,
>
> commit c17654aa8f76e36faf143deedf0495619567459a
> Author: pengyang0411 <pengyang0411 using gmail.com>​
> Date:   Sun Jan 12 22:26:37 2020 -0600​
> ​
>     update to v1.4.0​
> ​
> diff --git a/DESCRIPTION b/DESCRIPTION​
> index 62a7290..9b5a6b8 100644​
> --- a/DESCRIPTION​
> +++ b/DESCRIPTION​
> @@ -1,7 +1,7 @@​
>  Package: DeMixT​
>  Title: Cell type-specific deconvolution of heterogeneous tumor  
> samples with two or three​
>         components using expression data from RNAseq or microarray platforms​
> -Version: 1.3.0​
> +Version: 1.4.0​
>  Date: 2020-01-06
>
> And you have this  commit(7fa3d1b4e97a48112634452ac752a9fed8ade493)  
> taking it to  1.5.0 and then this one  
> (f5c7fdc25ed18dc21f16f02bdc20a1805efa2b50) to  1.5.1.
>
> We'll have to figure out a way to fix your version numbers. But as  
> far as the build report goes, if you pushed all your commits in  
> today, then you'll have to wait for the nightly builders to produce  
> the build report tomorrow.
>
> We'll get back to you on a path forward.
>
> Best,
>
> Nitesh
>
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of  
> py11 <py11 using rice.edu>
> Sent: Wednesday, January 15, 2020 7:46 PM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: [Bioc-devel] DeMixT issue
>
> Hi Bioconductor team,
>
> I just pushed the latest version from 1.3.1 to 1.3.2 into devel
> branch; however, there is no changes on the DeMixT website in
> biocondoctor,
> https://bioconductor.org/packages/devel/bioc/html/DeMixT.html
>
> Can you help me update it or is there anything I can do?
>
> Thanks,
> Peng
>
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