[Bioc-devel] A query about fixing bugs via github

[Vincent Carey]

On Sun, Jan 5, 2020 at 7:50 AM Tang, Wenhao <wenhao.tang15 using imperial.ac.uk>
wrote:

> Hello,
>
> I am following this instruction to fix bugs:
> http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
>
> However, both master and RELEASE_3_10 branches were not updated. For
> master branch, I have the following messages which could be helpful:
>
> $ git commit -m "DEV 1.5.10" .
> [master a358dce] DEV 1.5.10
>  1 file changed, 5 insertions(+), 13 deletions(-)
>
> $ git push upstream master
> Enumerating objects: 7, done.
> Counting objects: 100% (7/7), done.
> Delta compression using up to 12 threads
> Compressing objects: 100% (4/4), done.
> Writing objects: 100% (4/4), 391 bytes | 391.00 KiB/s, done.
> Total 4 (delta 3), reused 0 (delta 0)
> To git.bioconductor.org:packages/bayNorm
>    7c57170..a358dce  master -> master
>
> However, this update was not successful as the message "DEV 1.5.10" was
> not appeared in the github website.
>

Is this sorted now?  The git commands shown above don't affect a github
website.  On the other hand
at https://github.com/WT215/bayNorm, which you maintain, I see the tag on
several folders.

In the bioc git repository I see


commit 43af6a11b166dda2a2283bc5b51139b926297751

Merge: e9528c8 a358dce

Author: Wenhao Tang <wt215 using ic.ac.uk>

Date:   Sun Jan 5 21:16:10 2020 +0800


    Merge remote-tracking branch 'upstream/master'


commit a358dce3bf1b3fb7476d1b9cf4bef3622bab0ee1

Author: Wenhao Tang <wt215 using ic.ac.uk>

Date:   Sun Jan 5 20:34:19 2020 +0800


    DEV 1.5.10


which is what you are looking for?



> On my laptop, I am working on the folder, which was obtained via "git
> clone git using git.bioconductor.org:packages/bayNorm"
>
> Previously, I directly updated packages on master branch via: git add . ;
> git commit . ; and git push
>
> Not sure whether that procedure is a mistake or not.
>
> I appreciate for your help!
>
> Best wishes,
> Wenhao
>
>         [[alternative HTML version deleted]]
>
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