[Bioc-devel] atSNP graphic error on malbec1 and malbec2

[Shin, Sunyoung]

Dear all,

My package plotting function encounters an error on Bioconductor linux servers: malbec1 and malbec2. The error does not occur on my linux server. Are there anyone who have had similar experiences?

The plotting function is plotMotifMatch of atSNP Bioconductor. FYI, here is the session Information that I got from my server:

> print(sessionInfo())
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS:   /opt/ohpc/pub/libs/gnu7/R/3.6.1/lib64/R/lib/libRblas.so
LAPACK: /opt/ohpc/pub/libs/gnu7/R/3.6.1/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] atSNP_1.3.2    devtools_2.2.1 usethis_1.5.1 

loaded via a namespace (and not attached):
 [1] bitops_1.0-6                matrixStats_0.55.0         
 [3] fs_1.3.1                    bit64_0.9-7                
 [5] httr_1.4.1                  rprojroot_1.3-2            
 [7] GenomeInfoDb_1.20.0         tools_3.6.1                
 [9] backports_1.1.5             R6_2.4.1                   
[11] rGADEM_2.32.0               seqLogo_1.50.0             
[13] DBI_1.1.0                   lazyeval_0.2.2             
[15] BiocGenerics_0.30.0         colorspace_1.4-1           
[17] ade4_1.7-15                 withr_2.1.2                
[19] motifStack_1.28.0           tidyselect_1.0.0           
[21] prettyunits_1.0.2           processx_3.4.1             
[23] grImport2_0.2-0             bit_1.1-15.2               
[25] curl_4.3                    compiler_3.6.1             
[27] cli_2.0.1                   Biobase_2.44.0             
[29] desc_1.2.0                  DelayedArray_0.10.0        
[31] rtracklayer_1.44.4          scales_1.1.0               
[33] callr_3.3.2                 rappdirs_0.3.1             
[35] digest_0.6.25               Rsamtools_2.0.3            
[37] XVector_0.24.0              base64enc_0.1-3            
[39] jpeg_0.1-8.1                pkgconfig_2.0.3            
[41] htmltools_0.4.0             sessioninfo_1.1.1          
[43] dbplyr_1.4.2                BSgenome_1.52.0            
[45] htmlwidgets_1.5.1           rlang_0.4.4                
[47] RSQLite_2.2.0               BiocParallel_1.18.1        
[49] dplyr_0.8.4                 RCurl_1.98-1.1             
[51] magrittr_1.5                GenomeInfoDbData_1.2.1     
[53] Matrix_1.2-17               Rcpp_1.0.3                 
[55] munsell_0.5.0               S4Vectors_0.22.1           
[57] fansi_0.4.1                 lifecycle_0.1.0            
[59] MASS_7.3-51.4               SummarizedExperiment_1.14.1
[61] zlibbioc_1.30.0             pkgbuild_1.0.6             
[63] BiocFileCache_1.8.0         grid_3.6.1                 
[65] blob_1.2.1                  parallel_3.6.1             
[67] crayon_1.3.4                lattice_0.20-38            
[69] Biostrings_2.52.0           ps_1.3.0                   
[71] pillar_1.4.3                MotIV_1.40.0               
[73] GenomicRanges_1.36.1        stats4_3.6.1               
[75] pkgload_1.0.2               XML_3.99-0.3               
[77] glue_1.3.1                  data.table_1.12.8          
[79] remotes_2.1.0               vctrs_0.2.3                
[81] png_0.1-7                   testthat_2.3.0             
[83] gtable_0.3.0                purrr_0.3.3                
[85] assertthat_0.2.1            ggplot2_3.2.1              
[87] tibble_2.1.3                GenomicAlignments_1.20.1   
[89] memoise_1.1.0               IRanges_2.18.3             
[91] ellipsis_0.3.0             



Best,
Sunyoung