[Bioc-devel] Use of SummerisedExperiments or MultiAssayExperiments of many many Dataframes/ nested List objects

Levi Waldron |w@|dron@re@e@rch @end|ng |rom gm@||@com
Mon Feb 3 15:24:35 CET 2020

Krutik, what's the link to your package submission issue on GitHub? I feel
I would need a little more information on the package to give my opinion or
advice. It is true that SummarizedExperiment and MultiAssayExperiment are
designed primarily for experimental data rather than for differential
expression output.  But my first impression is that it will be important
for you to directly support output from DESeq2, edgeR, and limma, since
those are where most Bioconductor users get differential expression output


Levi Waldron

Associate Professor

Department of Epidemiology and Biostatistics

CUNY Graduate School of Public Health and Health Policy

Institute for Implementation Science in Population Health

55 W 125th St, New York NY 10035


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