[Bioc-devel] Is the ExpressionSet Class Deprecated?

[Martin Morgan]

If you're asking because you're thinking about package development, then this would be the right place ;) there are answers on the support site, though...

Martin

On 8/31/20, 11:37 AM, "Bioc-devel on behalf of Augustin Luna" <bioc-devel-bounces using r-project.org on behalf of cannin using gmail.com> wrote:

    Is the ExpressionSet class deprecated? If it is, what are the
    ramifications of this?

    * Are new packages barred from using ExpressionSet?
    * Will existing packages that use ExpressionSet be forced to move to
    SummarizedExperiment? If so, when?
    * Often deprecation means the removal of support. If ExpressionSet is
    deprecated will support be removed? If so, when?
    * Is SummarizedExperiment the replacement? Is SummarizedExperiment a
    superset of ExpressionSet with all ExpressionSet features available?

    PS: I posted this question here as well:
    https://support.bioconductor.org/p/133548/

    Thanks,
    Augustin Luna

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