[Bioc-devel] About rcellminerData and rcellminerData new versions

Nitesh Turaga ntur@g@@b|oc @end|ng |rom gm@||@com
Fri Aug 21 18:39:31 CEST 2020


It is an enhancement. Only bug fixes should go into RELEASE_3_11. 

The devel branch is the “master” branch in git, there is no RELEASE_3_12 yet. We will create it in the next release. Push your changes to the “master” branch. 

Address your emails to bioc-devel using r-project.org <mailto:bioc-devel using r-project.org>. 


> On Aug 21, 2020, at 12:34 PM, Elloumi, Fathi (NIH/NCI) [C] <fathi.elloumi using nih.gov> wrote:
> Dear Bioconductor team,
> As mentioned in my previous email (please see below), do you consider adding and cleaning data an enhancement should be only included in the develop branch and NOT in the current release (3_11) branch version but in the new release 3_12?
> I followed the instructions at https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ <https://secure-web.cisco.com/1wzo1Tbjitl2EN1_GywseAoblHfVez1mpR_8vtKAOR5f0SO5CK8EMPzf8lWYBMwUWDdtVm2grbA7V-FkME7sCxvoM2zAWl4-mKDEVlEBfIUHGG-fKAlYcFyWx5bbHmwP1WZPfm0pV8GFVSuNiWC3uoBSC5-Cn3tupqwknT4r6LZTSWEg0apO9OSaqMbuxDNVA9LhQg_2jkq5BkR6lvEglfR6jT7g7PGZBCto81NotT2sZ4fhV2ebLzDk17p6MMW0tk3NiwkA__fQoJg8zwhAoL4y9mygXWwFtJWtvNCth-SmXGKPmrDO9hDeUWsJeW3fJtGNCcVvHerOGfis4AvhRQ8Qu9-PVlnfShavxSk8gnL4/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fsync-existing-repositories%2F> with instruction to update on both devel and release branches.
> Please advise.
> Best,
> Fathi
> From: "Elloumi, Fathi (NIH/NCI) [C]" <fathi.elloumi using nih.gov <mailto:fathi.elloumi using nih.gov>>
> Date: Friday, August 21, 2020 at 10:51 AM
> To: "Van Twisk, Daniel" <Daniel.VanTwisk using RoswellPark.org <mailto:Daniel.VanTwisk using RoswellPark.org>>
> Subject: About rcellminerData and rcellminerData new versions
> Dear Daniel,
> This week I pushed new version (2.10.2) for both packages rcellminer and rcellminerData in the release_3_11 adding new drug data and cleaning some “bad” experiments. Do you consider this against your policy here below.
> From the Bioconductor paper in 2004
> (https://genomebiology.biomedcentral.com/articles/10.1186/gb-2004-5-10-r80 <https://secure-web.cisco.com/1VIGZ7EAtIYsfu6Ca661xpkH3USe0M_NVD2dMnpqmIJ-zLYogJiX-cBH9RcpX52D-aC7BLB6FzOEn03TBiMT0pAvlhYMIBhC18-gtN9awFCHYIH3V15aqi49y7yXs-HsjyOe7ybNZVC53ZCqKbOdtIRR773n2VId06RB6IAVxHuk_hhgVIu-4E4ISA5vNuqH3u352mqCz22_nYduC4PpyCSle6oXb5Tn1j0TWVa3Sm9g7xuBa2K8Mr6Nej9LEuMaeGGefdD08Ty8HlFxk3ozUp0K5ykcKsbsddKmN4aZkcz5qGfIIH81qRBv1wx0CQTavgHihm3S-z5BRj7nDFHkHBQ/https%3A%2F%2Fgenomebiology.biomedcentral.com%2Farticles%2F10.1186%2Fgb-2004-5-10-r80>):
> The only changes allowed to be made on the release version are bug
> fixes and documentation improvements. This ensures that users will not
> encounter radical new behaviors in code obtained in the release
> version. All other changes such as enhancements or design changes are
> carried out on the development branch [34].
> Please let me know asap and if needed we will back to previous commit.
> Thanks,
> -- Fathi
> Fathi Elloumi, PhD
> Sr. Bioinformatics Software Engineer
> Contractor GDIT Inc
> Developmental Therapeutics Branch
> Phone: 240-760-6601

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