[Bioc-devel] GenomicFeatures and/or TxDb.Hsapiens.UCSC.hg19.knownGene issue: missing tibble

[Leonardo Collado Torres]

Hi Bioc-devel,

I think that there's a potential issue with either GenomicFeatures,
TxDb.Hsapiens.UCSC.hg19.knownGene or an upstream package.


On a fresh R 4.0 Windows installation with BioC 3.11, I get the
following error message when installing
TxDb.Hsapiens.UCSC.hg19.knownGene as shown at
https://github.com/leekgroup/derfinderPlot/runs/618370463?check_suite_focus=true#step:13:1225.


2020-04-25T18:32:26.0765748Z * installing *source* package
'TxDb.Hsapiens.UCSC.hg19.knownGene' ...
2020-04-25T18:32:26.0769789Z ** using staged installation
2020-04-25T18:32:26.1001400Z ** R
2020-04-25T18:32:26.1044734Z ** inst
2020-04-25T18:32:26.2061605Z ** byte-compile and prepare package for
lazy loading
2020-04-25T18:32:30.7296724Z ##[error]Error: package or namespace load
failed for 'GenomicFeatures' in loadNamespace(i, c(lib.loc,
.libPaths()), versionCheck = vI[[i]]):
2020-04-25T18:32:30.7305615Z ERROR: lazy loading failed for package
'TxDb.Hsapiens.UCSC.hg19.knownGene'
2020-04-25T18:32:30.7306686Z * removing
'D:/a/_temp/Library/TxDb.Hsapiens.UCSC.hg19.knownGene'
2020-04-25T18:32:30.7307196Z  there is no package called 'tibble'
2020-04-25T18:32:30.7310561Z ##[error]Error: package 'GenomicFeatures'
could not be loaded
2020-04-25T18:32:30.7311805Z Execution halted

>From looking at the bioc-devel landing pages for both GenomicFeatures
and TxDb.Hsapiens.UCSC.hg19.knownGene, I see that tibble is not listed
as a dependency for either package.

Best,
Leo