[Bioc-devel] Windows Development Build Error Message for COHCAP

Charles Warden cw@rden @end|ng |rom coh@org
Wed Apr 22 18:00:47 CEST 2020


I noticed that I received a few error messages in the Windows build for COHCAP:


I changed the default settings to avoid an earlier error message (again, just on Windows), but I am currently getting an error message that I am having some trouble reproducing.

Can you help me with either of the following questions?

  1.  I apologize for the simple question, but where can I download the Windows executable for R-4.0.0?  I was able to reproduce and fix an earlier issue with R-devel (on Linux), but I was not certain how to get the error message for Windows.  I have tried to reproduce the error using the devtools installation from the GitHub code (https://github.com/cwarden45/COHCAP), but that can be installed successfully (with Windows R-3.6.3).
  2.  The .zip file for the Windows version on the devel page is different (http://bioconductor.org/packages/3.11/bioc/html/COHCAP.html), where I see cohcap_1.33.1.zip for Windows.  I think I saw the first error message in 1.33.1, and I made an intermediate change before changing the defaults to avoid the error message.  However, the strange thing was that I thought I saw an "OK" status while I was waiting for the 1.33.3 version to appear in the build reports (which I thought was for COHCAP 1.33.2).  Do all of the packages get re-built, regardless of whether an update is uploaded?
     *   I am wondering if there is a chance that I might be able to wait a day or two and see if I can get a status of "OK" for all steps on all of the test servers.  However, if that is true, then I am a little worried about what happens if there is a temporary error in the release version.

Thank you very much!

Charles Warden, Bioinformatics Specialist
Integrative Genomics Core
City of Hope National Medical Center
Shamrock Monrovia Building (655 Huntington Dr, Monrovia, CA, 91016)
Room 1086
Internal Ext: 80375 | Direct: 626-218-0375


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