[Bioc-devel] Installing libsbml for rsbml on a mac?
Martin Morgan
mtmorg@n@b|oc @end|ng |rom gm@||@com
Fri Apr 3 11:20:42 CEST 2020
The INSTALL file for rsbml says
~/b/git/rsbml master$ cat INSTALL
...
To build rsbml on the Mac, first install libsbml with:
`brew install homebrew/science/libsbml`.
but
~/b/git/rsbml master$ brew install homebrew/science/libsbml
Error: homebrew/science was deprecated. This tap is now empty as all its formulae were
migrated.
If I download and build from source
curl -O https://s3.amazonaws.com/linux-provisioning/libSBML-5.10.2-core-src.tar.gz
tar xzf libSBML-5.10.2-core-src.tar.gz
./configure --enable-layout
make
make install
when I install rsbml things go well enough until
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘rsbml’:
.onLoad failed in loadNamespace() for 'rsbml', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Users/ma38727/Library/Caches/pkgserver/library/78c7d37adb9cb6df9d8f1ec10fed882b/00LOCK-rsbml/00new/rsbml/libs/rsbml.so':
dlopen(/Users/ma38727/Library/Caches/pkgserver/library/78c7d37adb9cb6df9d8f1ec10fed882b/00LOCK-rsbml/00new/rsbml/libs/rsbml.so, 6): Symbol not found: _ASTNode_isName
Referenced from: /usr/local/lib/libsbml.5.dylib
Expected in: flat namespace
in /usr/local/lib/libsbml.5.dylib
Error: loading failed
Execution halted
Any hints?
Thanks, Martin
More information about the Bioc-devel
mailing list