[Bioc-devel] Help with tokay2 errors
Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Apr 2 21:34:31 CEST 2020
On quick glance into the logs on tokay2 it looks like it may be an issue with MotifDb and not your package.
In merge_motif it doesn't get to evaluating the code as it is hung up on trying to load the MotifDb library. Once this library is called,
There are numerous:
*** recursive gc invocation
and somewhere in the middle of all these repeated lines is
Error: package or namespace load failed for 'MotifDb':
.onLoad failed in loadNamespace() for 'MotifDb', details:
call: base::colSums(x, na.rm = na.rm, dims = dims, ...)
error: bad binding access
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Benjamin Jean-Marie Tremblay <benjamin.tremblay using uwaterloo.ca>
Sent: Saturday, March 28, 2020 4:22 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Help with tokay2 errors
Recently I've been having several examples fail on the tokay2 test machine,
specifically the i386 examples. Unfortunately I don't have access to a
windows machine to diagnose these failures right now, and the output that I
can see shows no errors; the examples just end abruptly. I don't see these
failures on my own computer (regular macOS, also docker bioc-devel image), so
I�m at a bit of a loss as to how to go about fixing these.
Any help would be greatly appreciated.
Bioc-devel using r-project.org mailing list
This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
More information about the Bioc-devel