[Bioc-devel] Help with tokay2 errors
Shepherd, Lori
Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Apr 2 21:34:31 CEST 2020
On quick glance into the logs on tokay2 it looks like it may be an issue with MotifDb and not your package.
In merge_motif it doesn't get to evaluating the code as it is hung up on trying to load the MotifDb library. Once this library is called,
There are numerous:
*** recursive gc invocation
and somewhere in the middle of all these repeated lines is
Error: package or namespace load failed for 'MotifDb':
.onLoad failed in loadNamespace() for 'MotifDb', details:
call: base::colSums(x, na.rm = na.rm, dims = dims, ...)
error: bad binding access
Execution halted
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Benjamin Jean-Marie Tremblay <benjamin.tremblay using uwaterloo.ca>
Sent: Saturday, March 28, 2020 4:22 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Help with tokay2 errors
Hi,
Recently I've been having several examples fail on the tokay2 test machine,
specifically the i386 examples. Unfortunately I don't have access to a
windows machine to diagnose these failures right now, and the output that I
can see shows no errors; the examples just end abruptly. I don't see these
failures on my own computer (regular macOS, also docker bioc-devel image), so
I�m at a bit of a loss as to how to go about fixing these.
http://bioconductor.org/checkResults/devel/bioc-LATEST/universalmotif/tokay2-checksrc.html
Any help would be greatly appreciated.
Thanks,
Benjamin Tremblay
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