[Bioc-devel] Push not triggering new builds neither updating package

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Sep 19 19:27:54 CEST 2019

After pushing an update to Bioconductor it can take up to 48 hours for the results to propagate to the build system and appear on the package landing pages.

The building and checking of packages occurs nightly -  You pushed Yesterday evening and most likely did not make the cutoff (4:45 PM EST)  for todays build report.  Your updates should be picked up on tonight's build and be reflected in tomorrow's report.  If the build and check were successful the new package version will also be available via install after the builds complete and propagate.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Tiago Lubiana Alves <tiago.lubiana.alves using usp.br>
Sent: Thursday, September 19, 2019 12:48 PM
To: bioc-devel <bioc-devel using r-project.org>
Subject: [Bioc-devel] Push not triggering new builds neither updating package

Hello all,

I am having issues with correcting bugs in the 3.9 version of package FCBF (
https://bioconductor.org/packages/release/bioc/html/FCBF.html) as well as
pushing modifications into the current "devel".

In the master branch, I have in DESCRIPTION:
Version: 1.3.2

In the RELEASE_3_9 branch, I have in DESCRIPTION:
Version: 1.2.5

The remote branches, both origin and upstream, state after git push:
Everything up-to-date.

Nevertheless, in the FCBF page, the available version is 1.2.2:

Version 1.2.2
In Bioconductor since BioC 3.8 (R-3.5) (1 year)

And when installing FCBF from the 3.10 version, I get:
 Bioconductor version 3.10 (BiocManager 1.30.4), R 3.6.0 (2019-04-26)
Installing package(s) 'FCBF' trying URL '

(1.3.1 instead of 1.3.2)

So the versions available are not updated.

I'm likely making some silly mistake, but I haven't been able to figure out
exactly what. Does anyone  have an idea of what might be happening?

Thank you very much for your time,

Tiago Lubiana
Mestrando em Bioinform�tica, FCF/USP
*Computational Systems Biology Laboratory (CSBL)*
Telefone (laborat�rio): +55 (11) 2648-0240
Telefone (pessoal): +55 (11) 954258000

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