[Bioc-devel] Error in HDF5 - Package submission - Not detected locally

Tiago Lubiana Alves t|@go@|ub|@n@@@|ve@ @end|ng |rom u@p@br
Sat Sep 14 23:25:30 CEST 2019


I am having a problem with a package submission build.

This is the package issue:
And this is the ERROR:

HDF5-DIAG: Error detected in HDF5 (1.10.5) thread 0:
  #000: C:/hdf5_build/CMake-hdf5-1.10.5/hdf5-1.10.5/src/H5F.c line 509
in H5Fopen(): unable to open file
    major: File accessibilty
    minor: Unable to open file
  #001: C:/hdf5_build/CMake-hdf5-1.10.5/hdf5-1.10.5/src/H5Fint.c line
1498 in H5F_open(): unable to open file: time = Fri Sep 13 15:05:35
, name = '/home/lubianat/.cache/ExperimentHub/5486ffbe0e3_1605', tent_flags = 0

Quitting from lines 46-51 (fcoex.Rmd)
Error: processing vignette 'fcoex.Rmd' failed with diagnostics:
failed to open file '/home/lubianat/.cache/ExperimentHub/5486ffbe0e3_1605'
--- failed re-building 'fcoex.Rmd'

It looks like something is pointing in the wrong direction, but I have not
been able to figure out exactly what. I've tried re-saving the data file
("mini_pbmc3k"), which is loaded in the vignette chunk of the error, but
that did not help.

Does anyone have a suggestion of what might be happening?

Thank you very much for your time,

Tiago Lubiana
Mestrando em Bioinformática, FCF/USP
*Computational Systems Biology Laboratory (CSBL)*
Telefone (laboratório): +55 (11) 2648-0240
Telefone (pessoal): +55 (11) 954258000

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