[Bioc-devel] RGL warning

[Shepherd, Lori]

Ideally yes all ERROR/WARNING/NOTES should be cleaned up.  Depending on the NOTES/WARNINGS some may be out of your control.  You could open a discussion with your reviewer on your open submission for BioTIP to see if there could be an exception or what else could be done about it.   https://github.com/Bioconductor/Contributions/issues/1220



Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Zhezhen Wang <zhezhen using uchicago.edu>
Sent: Wednesday, September 11, 2019 10:49 AM
To: Kasper Daniel Hansen <kasperdanielhansen using gmail.com>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] RGL warning

Thanks, do we need to solve all the warnings?

Zhezhen
________________________________
From: Kasper Daniel Hansen <kasperdanielhansen using gmail.com>
Sent: Wednesday, September 11, 2019 8:12 AM
To: Zhezhen Wang <zhezhen using uchicago.edu>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] RGL warning

GLX is a module for X11. You need that module installed in whatever X11 installation you have. My understanding (which is weak) is that GLX is a standard module so it is weird it is missing.

On Tue, Sep 10, 2019 at 12:39 PM Zhezhen Wang <zhezhen using uchicago.edu<mailto:zhezhen using uchicago.edu>> wrote:
Hi

I am having the following warnings and not sure what to update.

Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE

The package github link is here : https://github.com/xyang2uchicago/BioTIP

Zhezhen

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--
Best,
Kasper

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