[Bioc-devel] pwrEWAS package: Error in CHECK during checkResults on Windows

[Graw, Stefan H]

Dear devel team,

My package "pwrEWAS" produced an error (see below) during checkResults in CHECK on the windows server. I previously had an OK and did not change anything. Should I just wait for the next build or how can I fix this issue?

Thanks,
Stefan



** running examples for arch 'x64' ... ERROR
Running examples in 'pwrEWAS-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pwrEWAS
> ### Title: pwrEWAS - A computationally efficient tool for comprehensive
> ###   power estimation in EWAS
> ### Aliases: pwrEWAS
> ### Keywords: DNAm microarray power
>
> ### ** Examples
>
> outDelta <- pwrEWAS(minTotSampleSize = 10,
+     maxTotSampleSize = 20,
+     SampleSizeSteps = 10,
+     NcntPer = 0.5,
+     targetDelta = c(0.2, 0.5),
+     J = 1000,
+     targetDmCpGs = 10,
+     tissueType = "Adult (PBMC)",
+     detectionLimit = 0.01,
+     DMmethod = "limma",
+     FDRcritVal = 0.05,
+     core = 2,
+     sims = 30)
Using temporary cache C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\RtmpIhL8JZ/BiocFileCache
Warning: download failed
  web resource path: 'https://experimenthub.bioconductor.org/metadata/experimenthub.sqlite3'
  local file path: 'C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\RtmpIhL8JZ/BiocFileCache/1e987801b42_experimenthub.sqlite3'
  reason: Timeout was reached: [experimenthub.bioconductor.org] Connection timed out after 10014 milliseconds
Warning: bfcadd() failed; resource removed
  rid: BFC1
  fpath: 'https://experimenthub.bioconductor.org/metadata/experimenthub.sqlite3'
  reason: download failed
Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) :
  bfcadd() failed; see warnings()
Calls: pwrEWAS ... .create_cache -> .updateHubDB -> bfcadd -> bfcadd -> .util_download
Execution halted


>From https://bioconductor.org/checkResults/3.10/bioc-LATEST/pwrEWAS/tokay1-checksrc.html

----------------------------------------------------------------------
Confidentiality Notice: This e-mail message, including a...{{dropped:10}}