[Bioc-devel] EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9

[Hu, Qiang]

Hi,

My packages, Rcwl and RcwlPipelines got building error from the windows machine. But those two packages have a BBSoption file to skip the windows system and the packages didn't be checked in the tokay1 before. Could you help to check it?

Thanks,
Qiang
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Hu, Qiang <Qiang.Hu using RoswellPark.org>
Sent: Friday, April 26, 2019 2:47 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9

Hi all,


Could you please help to check whether the required python package "cwltool" is installed and works in malbec2 and celaya2?

Here is part of the error log in malbec2:

$cwltool --version

...

pkg_resources.DistributionNotFound: The 'pyparsing' distribution was not found and is required by rdflib
...
It seems the cwltool doesn't work properly.

For elaya2, the required cwltool is not installed.


Thanks,
Qiang


________________________________
From: BBS-noreply using bioconductor.org <BBS-noreply using bioconductor.org>
Sent: Friday, April 26, 2019 2:16:38 PM
To: Hu, Qiang
Subject: EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9

[This is an automatically generated email. Please don't reply.]

Hi Rcwl maintainer,

According to the Multiple platform build/check report for BioC 3.9,
the Rcwl package has the following problem(s):

  o ERROR for 'R CMD INSTALL' on malbec2. See the details here:
      https://master.bioconductor.org/checkResults/3.9/bioc-LATEST/Rcwl/malbec2-install.html

  o ERROR for 'R CMD build' on malbec2. See the details here:
      https://master.bioconductor.org/checkResults/3.9/bioc-LATEST/Rcwl/malbec2-buildsrc.html

Please take the time to address this by committing and pushing
changes to your package at git.bioconductor.org

Notes:

  * This was the status of your package at the time this email was sent to you.
    Given that the online report is updated daily (in normal conditions) you
    could see something different when you visit the URL(s) above, especially if
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  * It is possible that the problems reported in this report are false positives,
    either because another package (from CRAN or Bioconductor) breaks your
    package (if yours depends on it) or because of a Build System problem.
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  * Please check the report again 24h after you've committed your changes to the
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