[Bioc-devel] CRAN packages depending on broken Bioc 3.11 packages may be archived

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Tue Nov 26 18:54:45 CET 2019

All of these package have been notified from the Bioconductor side as well.  We hope the maintainers will respond shortly.
heatmap and topGO  have responded directly and are working on fixes.  I hope the others are too.

Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Henrik Bengtsson <henrik.bengtsson using gmail.com>
Sent: Tuesday, November 26, 2019 12:47 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] CRAN packages depending on broken Bioc 3.11 packages may be archived

In case it's not known, paraphrasing from CRAN notification email,
CRAN [sic!] packages:

  TROM, demi, diffMeanVar, maGUI, metaboGSE

risk being archived on December 7 because broken Bioconductor dependencies:

  Heatplus, missMethyl, oligo, oligoClasses, topGO

prevent pdInfoBuilder from being installed.

I don't maintain any of the above - I'm just the messenger.


Bioc-devel using r-project.org mailing list

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list