[Bioc-devel] Git pushing problems for data package

Mon Nov 18 13:43:25 CET 2019

Hi Tim,

I've standardized your user name across your packages. 

Firstly, please check  https://git.bioconductor.org/BiocCredentials/permissions_by_user/,

And tell me what you see?

Nitesh 

On 11/18/19, 5:27 AM, "Bioc-devel on behalf of Turaga, Nitesh" <bioc-devel-bounces using r-project.org on behalf of Nitesh.Turaga using RoswellPark.org> wrote:

    Hi Tim,

    It seems like you may have had more than two usernames.

    I might have ended my search too early.

    I'll fix this.

    Just give me a little time.

    Best

    Nitesh

    --
    Nitesh Turaga
    Senior Programmer Analyst
    Bioconductor core team
    Roswell Park

    ________________________________
    From: Tim Triche, Jr. <tim.triche using gmail.com>
    Sent: Sunday, November 17, 2019 4:25:26 PM
    To: Turaga, Nitesh <Nitesh.Turaga using RoswellPark.org>
    Cc: Hervé Pagès <Bioc-devel using r-project.org>
    Subject: Re: [Bioc-devel] Git pushing problems for data package

    Followup: I changed my github username associated with my email address to my actual GitHub username (I am thinking that we will need to update the maintainer email for `biscuiteer` and `biscuiteerData` as a result).  However, the Bioconductor credentials checker indicates that I still don't have access to maintain the repositories that I am maintaining.  So if you could counsel me on how to fix that, it would be awesome, because I've run out of ideas on my end :-/

    Thanks so much!

    --t

    On Sun, Nov 17, 2019 at 4:19 PM Tim Triche, Jr. <tim.triche using gmail.com<mailto:tim.triche using gmail.com>> wrote:
    This is suboptimal:

    Email: tim.triche using gmail.com<mailto:tim.triche using gmail.com>
    GitHub Username: jamorrison

    As you might imagine, I am not Jacob and Jacob is not me.  I'm wondering how this happened?

    --t

    On Sun, Nov 17, 2019 at 4:17 PM Tim Triche, Jr. <tim.triche using gmail.com<mailto:tim.triche using gmail.com>> wrote:
    I went to the git login checker, and activated my (usual) maintainer address:
    https://git.bioconductor.org/BiocCredentials/permissions_by_user/

    This informed me that I have access (as tim.triche using gmail.com<mailto:tim.triche using gmail.com>) to:
    'tim.triche using gmail.com<mailto:tim.triche using gmail.com>' has access to the following packages:
    methylumi
    methyAnalysis

    So that doesn't seem like a good thing either.  I'm getting progressively more confused the deeper I look :-/

    --t

    On Sun, Nov 17, 2019 at 3:46 PM Tim Triche, Jr. <tim.triche using gmail.com<mailto:tim.triche using gmail.com>> wrote:
    Actually, it seems to have somehow got worse?!

    $ cd MTseeker
    $ git push upstream
    FATAL: W any packages/MTseeker t.triche DENIED by fallthru
    (or you mis-spelled the reponame)
    fatal: Could not read from remote repository.

    Please make sure you have the correct access rights
    and the repository exists.

    Now it seems as if all repositories are using t.triche for access somehow?  Perhaps I have misconfigured something somewhere.  I will look into this... but my github SSH keys are all for `ttriche` not `t.triche`.

    --t

    On Sun, Nov 17, 2019 at 3:21 PM Tim Triche, Jr. <tim.triche using gmail.com<mailto:tim.triche using gmail.com>> wrote:
    Hi Nitesh,

    I'm afraid that I am still getting the same problems today where it asks for authentication as "t.triche" instead of "ttriche".  Could you check into this?

    $ git clone git using github.com:trichelab/MTseekerData.git
    $ cd MTseekerData
    $ git remote add upstream git using git.bioconductor.org:packages/MTseekerData
    $ git push upstream master
    FATAL: W any packages/MTseekerData t.triche DENIED by fallthru
    (or you mis-spelled the reponame)
    fatal: Could not read from remote repository.

    Please make sure you have the correct access rights
    and the repository exists.

    # OK, let's check:

    $ git clone git using git.bioconductor.org:packages/MTseekerData MTseekerData.bioc
    remote: Compressing objects: 100% (84/84), done.
    remote: Total 165 (delta 82), reused 146 (delta 70)
    Receiving objects: 100% (165/165), 9.93 MiB | 7.90 MiB/s, done.
    Resolving deltas: 100% (82/82), done.

    $ grep Version MTseekerData/DESCRIPTION
    Version: 1.5.2

    $ grep Version MTseekerData.bioc/DESCRIPTION
    Version: 1.5.0

    $ grep name ~/.gitconfig
    name = ttriche

    I'm out of ideas ...

    --t

    On Fri, Nov 15, 2019 at 11:09 AM Tim Triche, Jr. <tim.triche using gmail.com<mailto:tim.triche using gmail.com>> wrote:
    Thanks Nitesh! Not sure how that happened but thanks for fixing it.

    --t

    > On Nov 15, 2019, at 7:56 AM, Turaga, Nitesh <Nitesh.Turaga using roswellpark.org<mailto:Nitesh.Turaga using roswellpark.org>> wrote:
    >
    > Hi Tim,
    >
    > That's because you have for some reason two different usernames with Bioconductor.
    >
    > I've corrected the issue. You are now universally "ttriche" only.
    >
    > You should have access now.
    >
    > Best
    >
    > Nitesh
    >
    >> On Nov 15, 2019, at 9:52 AM, Tim Triche, Jr. <tim.triche using gmail.com<mailto:tim.triche using gmail.com>> wrote:
    >>
    >> Hi all,
    >>
    >> How do I push changes to my  MTseekerData package in git?
    >>
    >> I get the following error when I try to commit changes:
    >>
    >> tim using tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git remote -v
    >> origin git using github.com:trichelab/MTseekerData.git (fetch)
    >> origin git using github.com:trichelab/MTseekerData.git (push)
    >> upstream git using git.bioconductor.org:packages/MTseekerData (fetch)
    >> upstream git using git.bioconductor.org:packages/MTseekerData (push)
    >> tim using tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git pull upstream master
    >> From git.bioconductor.org:packages/MTseekerData
    >> * branch            master     -> FETCH_HEAD
    >> Already up to date.
    >> tim using tim-ThinkPad-T470:~/Dropbox/MTseekerData$ git push upstream
    >> FATAL: W any packages/MTseekerData t.triche DENIED by fallthru
    >> (or you mis-spelled the reponame)
    >> fatal: Could not read from remote repository.
    >>
    >> Please make sure you have the correct access rights
    >> and the repository exists.
    >>
    >>
    >> I do not get this problem when pushing to the MTseeker git repository.
    >>
    >> Thanks for any insights,
    >>
    >>
    >> --t
    >>    [[alternative HTML version deleted]]
    >>
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