[Bioc-devel] index of Bioc repository unavailable

[Pages, Herve]

Hi Laurent,

This is temporary. We're in the process of creating the 3.10 annotation 
repo by "forking" the 3.9 annotation repo. As part of this process, we 
run a script that generates the PACKAGES index for the new 3.10
annotation repo. The process will take a few more hours before it
completes. Then this warning should go away.

Sorry for the inconvenience.

Cheers,
H.

On 5/28/19 13:04, Laurent Gatto wrote:
> Travis recently started to fail for Bioc devel (see [0] and [1] for another possibly related report), which seems to related to a warning in BiocManager::available():
> 
>> BiocManager::version()
> [1] ‘3.10’
>> str(BiocManager::available())
> Warning: unable to access index for repository https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_3.10_data_annotation_src_contrib&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=I-j2hOB7kAvw9DSOUy8nHyxKb5KH19tqAAxuwZ5E8HY&e= :
>    cannot open URL 'https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_3.10_data_annotation_src_contrib_PACKAGES&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=E4iryKtRU-QLj7b-IdceimIOQCK_Ch9bdKzN-YgZMwE&e= '
>   chr [1:16400] "a4" "a4Base" "a4Classif" "a4Core" "a4Preproc" "a4Reporting" ...
> 
> Is this a temporary or known issue?
> 
> Thanks in advance.
> 
> Laurent
> 
> [0] https://urldefense.proofpoint.com/v2/url?u=https-3A__travis-2Dci.org_lgatto_Features_jobs_538412208&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=GPakdUkHa8x0dEHAyNi_W5Qup4XJjADUPM2Dk_bdmN4&e=
> [1] https://urldefense.proofpoint.com/v2/url?u=https-3A__travis-2Dci.community_t_error-2Dbioconductor-2Dversion-2Dnot-2Dchanged_3491&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=MN6IdiDrYMIta6JGJlEJ19qaks1n9GKa4h6zMsFtwhQ&e=
> 
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UAmM0hNRENFU1Y4T29z5hJJHFLKXbyWj2W8KtGaqZEE&s=nYwhpdHm_ENLuhTqIli7MtPUPdf8EKlcLuXvxqiI_sE&e=
> 

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319