[Bioc-devel] pushing changes to an existing package

[Turaga, Nitesh]

Hi Simina,

Now that the RELEASE_3_9 branch and pushes are available to everyone, I can help you with this.

It seems like your upstream branch is a little funny looking, is this how it got pasted in or maybe it's a mistake.

What you gave: (I understand that the mailto: stuff may have been added later but auto format settings in email, but the trailing "g" at the end of the line is bugging me and I can't help but think it might be that)

upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org><mailto:git using git.bioconductor.org>:packages/MultiMed.g (fetch)
upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/MultiMed.g (push)

What it's supposed to be:

upstream       git using git.bioconductor<mailto:git using git.bioconductor>.org:packages/MultiMed.git (fetch)
upstream.      git using git.bioconductor<mailto:git using git.bioconductor>.org:packages/MultiMed.git (push)


You can try first by resetting your upstream,

git remote set-url upstream git using git.bioconductor<mailto:git using git.bioconductor>.org:packages/MultiMed.git

Let me know if this works.

Best,

Nitesh


On May 2, 2019, at 1:02 PM, Turaga, Nitesh <Nitesh.Turaga using RoswellPark.org<mailto:Nitesh.Turaga using RoswellPark.org>> wrote:

Hi Simina,

We are going through the release process for Bioc 3.9 now, so all commits are blocked until further notice.

I can get back to helping you debug this issue once we are done with the release.

https://stat.ethz.ch/pipermail/bioc-devel/2019-May/015050.html

Best,

Nitesh

On May 2, 2019, at 12:58 PM, Simina Boca <smb310 using georgetown.edu<mailto:smb310 using georgetown.edu>> wrote:

Thank you Nitesh and sorry for missing this initially!

This one seems fine:
C:\Users\smb310\Documents\GitHub\MultiMed [devel]> git remote -v
origin  https://github.com/SiminaB/MultiMed.git (fetch)
origin  https://github.com/SiminaB/MultiMed.git (push)
upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/MultiMed.g (fetch)
upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/MultiMed.g (push)

However, it seems like I only have read, not write access to the package:
C:\Users\smb310\Documents\GitHub\MultiMed [devel]> ssh -T git using git.bioconductor.org<mailto:git using git.bioconductor.org> | grep MultiMed
Warning: Permanently added 'git.bioconductor.org<http://git.bioconductor.org/>,34.192.48.227' (ECDSA) to the list of known hosts.
R      packages/MultiMed

Cheers,
Simina



On Tue, Apr 30, 2019 at 11:01 AM Turaga, Nitesh <Nitesh.Turaga using roswellpark.org<mailto:Nitesh.Turaga using roswellpark.org>> wrote:
Hi Simina,

http://bioconductor.org/developers/how-to/git/faq/ #14 to help us out a little more please.

Best,

Nitesh

On Apr 30, 2019, at 10:45 AM, Simina Boca <smb310 using georgetown.edu<mailto:smb310 using georgetown.edu>> wrote:

Hello,

I am trying to update my package MultiMed
https://www.bioconductor.org/packages/release/bioc/html/MultiMed.html. It's
on Github at https://github.com/SiminaB/MultiMed. I got and updated the SSH
key (since I am using a new computer) but when I try to "git fetch --all" I
still get a permission-related error:

C:\Users\smb310\Documents\GitNuh\Multimed [devel]> git fetch --all
Fetching origin
Fetching upstream
Warning: Permanently added 'git.bioconductor.org<http://git.bioconductor.org/>,34.172.43.227' <ECDSA> to
the list of known hosts.
FATAL: R any packages/MultiMed.g SiminaB DENIED by fallthru
(or you mis-spelled the reponame)
fatal: Could not read from remote repository.

Please make sure you have the current access rights and the repository
exists.
error: Could not fetch upstream

I appreciate your help!

Cheers,
Simina


--
Simina M. Boca
Assistant Professor
Innovation Center for Biomedical Informatics  (ICBI)
Departments of Oncology and Biostatistics, Bioinformatics and
Biomathematics | Georgetown University Medical Center
Cancer Prevention and Control Program | Lombardi Comprehensive Cancer Center

2115 Wisconsin Ave NW, Suite 110, Washington, DC 20007
Phone: (202) 687-1545, Fax: (202) 687-5011
http://icbi.georgetown.edu/boca
https://sites.google.com/georgetown.edu/siminaboca/

[[alternative HTML version deleted]]

_______________________________________________
Bioc-devel using r-project.org<mailto:Bioc-devel using r-project.org> mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel


This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.


--
Simina M. Boca
Assistant Professor
Innovation Center for Biomedical Informatics  (ICBI)
Departments of Oncology and Biostatistics, Bioinformatics and Biomathematics | Georgetown University Medical Center
Cancer Prevention and Control Program | Lombardi Comprehensive Cancer Center

2115 Wisconsin Ave NW, Suite 110, Washington, DC 20007
Phone: (202) 687-1545, Fax: (202) 687-5011
http://icbi.georgetown.edu/boca
https://sites.google.com/georgetown.edu/siminaboca/




This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]

_______________________________________________
Bioc-devel using r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]