[Bioc-devel] Unclear build failure ‘appending gaps’

Karl Stamm k@r|@@t@mm @end|ng |rom gm@||@com
Tue Mar 26 16:57:27 CET 2019

That first error has resolved, and I have new errors on the build on
Windows and on OSX, while the Linux build goes fine.

I have build and check and test on OSX and Windows on my end and everything
works. There must be something different on the Bioc build servers I am not
matching up with. The OSX errors mention LateX commands, so that's not a
cross platform problem. Might be the build-server configuration.

I'm trying to get that red error sign off my build report, but I can't see
how to work on non-reproducible errors.

On Sat, Mar 23, 2019 at 10:21 AM Michael Lawrence <lawrence.michael using gene.com>

> This is due to some buggy changes to the internals of the S4Vectors
> package. I should be able to fix these today.
> On Sat, Mar 23, 2019 at 7:41 AM Karl Stamm <karl.stamm using gmail.com> wrote:
>> My package rgsepd has failed build recently.
>> I don't understand the error message, and need some guidance. It says
>> Error
>> building vignette, "appending gaps is not supported"
>> I can't find that statement anywhere in Google, so I don't know what it's
>> referring to.  Unfortunately, my package is an automation pipeline, so
>> there's one line of code that runs many others, and the line triggering
>> the
>> error could represent any part of my pipeline.
>> I've checked the build on my end before uploading code changes, so I cant
>> reproduce the error. My build was okay until very recently, I have added a
>> CITATION file which is rather lengthy, and may be impacting the vignette
>> build?
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