[Bioc-devel] No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit

Pages, Herve hp@ge@ @end|ng |rom |redhutch@org
Tue Jun 25 04:17:05 CEST 2019

Hi Paul,

After a long hunt, the software package causing these daily
reinstallations of BSgenome.Hsapiens.UCSC.hg38 has been
identified and his maintainer contacted.

Sorry for the inconvenience this has caused so far.


On 6/24/19 12:31, Paul Shannon wrote:
> Warning in .seqlengths_TwoBitFile(x) : mustOpen:
>     Can't open /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit
>     to read: No such file or directory
>     Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed
> I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 (windows).
> Any advice?
>   - Paul

Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

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