[Bioc-devel] normalize_names_replacement_value error with colnames<- on SummarizedExperiment

[Vincent Carey]

my installation of Bioc 3.10 passes valid()


> ee = SummarizedExperiment(assay=data.matrix(mtcars))

> ee

class: SummarizedExperiment

dim: 32 11

metadata(0):

assays(1): ''

rownames(32): Mazda RX4 Mazda RX4 Wag ... Maserati Bora Volvo 142E

rowData names(0):

colnames(11): mpg cyl ... gear carb

colData names(0):

> colnames(ee)[1] = "foo"

*Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : *

*  object 'normalize_names_replacement_value' not found*


> sessionInfo()

R version 3.6.0 Patched (2019-05-06 r76460)

Platform: x86_64-apple-darwin15.6.0 (64-bit)

Running under: macOS Sierra 10.12.6


Matrix products: default

BLAS:
/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib

LAPACK:
/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib


locale:

[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8


attached base packages:

[1] parallel  stats4    stats     graphics  grDevices utils     datasets

[8] methods   base


other attached packages:

 [1] SummarizedExperiment_1.15.1 DelayedArray_0.11.0

 [3] BiocParallel_1.19.0         matrixStats_0.54.0

 [5] Biobase_2.45.0              GenomicRanges_1.37.10

 [7] GenomeInfoDb_1.21.1         IRanges_2.19.9

 [9] S4Vectors_0.23.11           BiocGenerics_0.31.4

[11] rmarkdown_1.13


loaded via a namespace (and not attached):

 [1] Rcpp_1.0.1             knitr_1.23             XVector_0.25.0

 [4] zlibbioc_1.31.0        lattice_0.20-38        tools_3.6.0

 [7] grid_3.6.0             xfun_0.7               htmltools_0.3.6

[10] digest_0.6.19          Matrix_1.2-17          startup_0.12.0

[13] GenomeInfoDbData_1.2.1 BiocManager_1.30.4     bitops_1.0-6

[16] RCurl_1.95-4.12        evaluate_0.14          compiler_3.6.0

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