[Bioc-devel] Problems with MACPET package

[Ioannis Vardaxis]

My seesionInfo:
sessionInfo()
R Under development (unstable) (2019-07-11 r76823)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.5

And
BiocManager::install("stringdist")
Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable) (2019-07-11 r76823)
Installing package(s) 'stringdist'
Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7:
 cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7:
 cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7/PACKAGES'
Warning: unable to access index for repository https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7:
 cannot open URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7/PACKAGES'
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘stringdist’
Do you want to attempt to install these from sources? (Yes/no/cancel) Yes


Also, I cannot push to RELEASE_3_10 because I get error:

$git checkout RELEASE_3_10
error: pathspec 'RELEASE_3_10' did not match any file(s) known to git


Shouldn’t I use the R devel version?

Best,
Ioannis


15. jul. 2019 kl. 09:53 skrev Ioannis Vardaxis <ioannis.vardaxis using ntnu.no<mailto:ioannis.vardaxis using ntnu.no>>:

My seesionInfo:
sessionInfo()
R Under development (unstable) (2019-07-11 r76823)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.5

And
BiocManager::install("stringdist")
Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable) (2019-07-11 r76823)
Installing package(s) 'stringdist'
Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7:
 cannot open URL 'https://bioconductor.org/packages/3.10/data/annotation/bin/macosx/el-capitan/contrib/3.7/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7:
 cannot open URL 'https://bioconductor.org/packages/3.10/data/experiment/bin/macosx/el-capitan/contrib/3.7/PACKAGES'
Warning: unable to access index for repository https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7:
 cannot open URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.7/PACKAGES'
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘stringdist’
Do you want to attempt to install these from sources? (Yes/no/cancel) Yes


Also, I cannot such to RELEASE_3_10 because I get error:

$git checkout RELEASE_3_10
error: pathspec 'RELEASE_3_10' did not match any file(s) known to git



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