[Bioc-devel] GenVisR Package Failing

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Tue Feb 26 17:28:46 CET 2019

The ERROR your package is experiencing has to do with conditional length greater than 1.  We did send you an email indicating this entitled "Bioconductor Package ERROR"  that had the following information:

In a continued effort to better code, there have been efforts to identify problematic existing code in packages. The current issue at hand is identifying a conditional with a length greater than 1. This could either be an over site of not using any() or all() or could potential indicate problematic code with unexpected multiple output.

dummy example:

> check = c(1:5)
> if (check > 3){
+    FALSE
+ }

It is controlled with the following that are implemented on the build system


And there is some documentation here which should help get the environment similar to reproduce the error:


There is a more detailed Test output section at the bottom of the build report page that shows the code that was being run.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Skidmore, Zach <zskidmor using wustl.edu>
Sent: Tuesday, February 26, 2019 11:10 AM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] GenVisR Package Failing

Hi All,

I maintain the GenVisR package which is currently failing on the devel
branch. I can see it has something to do with the test cases however the
error message is not clear, I don't get a line number for which test
case has failed or any other indication to that effect. Normally this
wouldn't be a problem but I only see failures in the bioc environments
(locally everything is fine). I had thought it might be related to my
visual test cases with the vdiffr package however I skipped all those in
version 1.15.1.

Is there any way I can find the sessionInfo() for the bioc-devel
environment to make sure everything matches my local environment?



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