[Bioc-devel] GenVisR Package Failing

[Shepherd, Lori]

The ERROR your package is experiencing has to do with conditional length greater than 1.  We did send you an email indicating this entitled "Bioconductor Package ERROR"  that had the following information:



In a continued effort to better code, there have been efforts to identify problematic existing code in packages. The current issue at hand is identifying a conditional with a length greater than 1. This could either be an over site of not using any() or all() or could potential indicate problematic code with unexpected multiple output.

dummy example:

```
> check = c(1:5)
> if (check > 3){
+    FALSE
+ }



It is controlled with the following that are implemented on the build system


_R_CHECK_LENGTH_1_CONDITION_ =package:_R_CHECK_PACKAGE_NAME_
_R_CHECK_LENGTH_1_LOGIC2_=package:_R_CHECK_PACKAGE_NAME_

And there is some documentation here which should help get the environment similar to reproduce the error:

http://bioconductor.org/developers/package-guidelines/#checkingenv




There is a more detailed Test output section at the bottom of the build report page that shows the code that was being run.

http://bioconductor.org/checkResults/3.9/bioc-LATEST/GenVisR/malbec2-checksrc.html








Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Skidmore, Zach <zskidmor using wustl.edu>
Sent: Tuesday, February 26, 2019 11:10 AM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] GenVisR Package Failing

Hi All,


I maintain the GenVisR package which is currently failing on the devel
branch. I can see it has something to do with the test cases however the
error message is not clear, I don't get a line number for which test
case has failed or any other indication to that effect. Normally this
wouldn't be a problem but I only see failures in the bioc environments
(locally everything is fine). I had thought it might be related to my
visual test cases with the vdiffr package however I skipped all those in
version 1.15.1.


Is there any way I can find the sessionInfo() for the bioc-devel
environment to make sure everything matches my local environment?


Thanks!

Zach


________________________________
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
_______________________________________________
Bioc-devel using r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]