[Bioc-devel] peculiar warning in BiocOncoTK

[Vincent Carey]

I can't get a handle on this apparent issue with 'car' -- there is some

indication of this globalVariables error at
https://rdrr.io/github/hadley/tibble/f/revdep/problems.md  but I don't see
an explanation.  The pernicious aspect of this, which seems limited

to mac, is that it stops the "possible problems" process, and various notes

are not emitted that should be.


* checking whether the namespace can be loaded with stated dependencies ...
WARNING

Error in globalVariables(".groups") :

  could not find function "globalVariables"

Error: unable to load R code in package ‘car’

Execution halted


A namespace must be able to be loaded with just the base namespace

loaded: otherwise if the namespace gets loaded by a saved object, the

session will be unable to start.


Probably some imports need to be declared in the NAMESPACE file.

* checking whether the namespace can be unloaded cleanly ... OK

* checking dependencies in R code ... OK

* checking S3 generic/method consistency ... OK

* checking replacement functions ... OK

* checking foreign function calls ... OK

* checking R code for possible problems ... NOTE

Error in globalVariables(".groups") :

  could not find function "globalVariables"

Error: unable to load R code in package ‘car’

Execution halted


R Under development (unstable) (2019-11-01 r77355)

Platform: x86_64-apple-darwin15.6.0 (64-bit)

Running under: macOS Mojave 10.14.6


Matrix products: default

BLAS:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.0.dylib

LAPACK:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib


locale:

[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8


attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base


other attached packages:

[1] rmarkdown_2.0


loaded via a namespace (and not attached):

 [1] Rcpp_1.0.3        knitr_1.26        magrittr_1.5      rcmdcheck_1.3.3

 [5] R6_2.4.1          rlang_0.4.2       fansi_0.4.0       tools_4.0.0

 [9] pkgbuild_1.0.6    xopen_1.0.0       xfun_0.11         cli_2.0.0

[13] withr_2.1.2       htmltools_0.4.0   digest_0.6.23     assertthat_0.2.1

[17] rprojroot_1.3-2   crayon_1.3.4      processx_3.4.1    startup_0.14.0

[21] callr_3.4.0       ps_1.3.0          codetools_0.2-16  glue_1.3.1

[25] evaluate_0.14     compiler_4.0.0    desc_1.2.0        backports_1.1.5

[29] prettyunits_1.0.2

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