[Bioc-devel] Cairo dependency problem in the OSX machine

[Shepherd, Lori]

xquartz is already installed on the system and tested that it is functioning properly.

This tends to occur when the Cairo binary has not been built yet for the devel version of R.
https://www.mail-archive.com/bioc-devel@r-project.org/msg10538.html

From the Cairo landing page,  indeed the R-devel MAC binary is not available.
https://cran.r-project.org/web/packages/Cairo/index.html
This ERROR can be ignored for now and will clear up once the binary becomes available.
I will let your reviewer know so this will not hinder your review process on the Single Package Builder.

Cheers,



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
Sent: Tuesday, December 10, 2019 8:26 AM
To: Tiago Lubiana Alves <tiago.lubiana.alves using usp.br>; bioc-devel <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Cairo dependency problem in the OSX machine

Thank you.   We will look into it.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Tiago Lubiana Alves <tiago.lubiana.alves using usp.br>
Sent: Monday, December 9, 2019 1:55 PM
To: bioc-devel <bioc-devel using r-project.org>
Subject: [Bioc-devel] Cairo dependency problem in the OSX machine

Hello all,

Recently, a package I submitted to Bioconductor failed with an
error message in the OS X system.

This is the link for the build:
http://bioconductor.org/spb_reports/PubScore_buildreport_20191208212325.html#celaya2_buildsrc_anchor

The problem was with the Cairo package, which is a dependency of "plotly":
https://cran.r-project.org/web/packages/plotly/index.html


Stack Overflow says that if I owned the Mac, I should install xquartz,
which doesn't come anymore built in the OS X system.

Any suggestions of how I can proceed?
Best and thanks,
Tiago




Tiago Lubiana
Mestrando em Bioinform�tica, FCF/USP
*Computational Systems Biology Laboratory (CSBL)*
Telefone (laborat�rio): +55 (11) 2648-0240
Telefone (pessoal): +55 (11) 954258000

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