[Bioc-devel] Final List of Deprecated Packages for Bioc3.10
Ludw|g@Ge|@t||nger @end|ng |rom @ph@cuny@edu
Wed Dec 4 19:22:04 CET 2019
Is it possible to undeprecate the "PathNet" package?
I just checked, the problem is a failing unit test, causing the otherwise well working package to fail R CMD check.
I fixed this here on a local clone of https://git.bioconductor.org/packages/PathNet and could push these minor changes if granted access.
The PathNet package implements a solid network-based enrichment method and the corresponding paper has some 50 citations - it would thus be unfortunate to see it gone.
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
Sent: Monday, October 7, 2019 9:41 AM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Final List of Deprecated Packages for Bioc3.10
The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly.
The final list for the 3.10 release is as follows:
Maintainer requested deprecation:
Experiment Data Package:
Experiment Data Package:
Renaming The package CAMTHC is marked for deprecation. This package has been renamed to debCAM
The following Annotation Packages have been user requested deprecated:
They are replaced with
The Bioconductor team will continue to send emails out to packages that have been broken across all platforms for an extended period of time as those are packages that are up for immediate deprecation if not corrected in a timely fashion. Packages that are ERRORing and not fixed before the October 30th 3.10 release will immediately be marked as deprecated in devel 3.11.
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
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