[Bioc-devel] package size issue

Pages, Herve hp@ge@ @end|ng |rom |redhutch@org
Sat Apr 27 01:04:36 CEST 2019


Interesting observation Boris.

The software packages currently have 1261 pdf vignettes and 983 html 
vignettes in BioC 3.9. Here are some quick stats that confirm Boris' 
observation (sizes are in bytes):

 > summary(pdf.sizes)
     Min.  1st Qu.   Median     Mean  3rd Qu.     Max.
     5267   156919   225146   454966   411965 26385420

 > summary(html.sizes)
     Min.  1st Qu.   Median     Mean  3rd Qu.     Max.
      663   641812   929989  1607509  1785061 83352286

 > length(pdf.sizes)
[1] 1261

 > length(html.sizes)
[1] 983

The pdf vignettes are almost 4x bigger than the html ones in average.

H.


On 4/26/19 15:18, Boris Steipe wrote:
> I've recently been struggling with this and found to my surprise that even basically empty HTML vignettes are 1Mb in size due to the extensive Javascript they contain. PDF vignettes are much smaller.
>
> Perhaps this helps.
> Cheers,
> Boris
>
>
>
>
>
>> On 2019-04-26, at 17:44, Jianhai Zhang <zhang.jianhai using hotmail.com> wrote:
>>
>> Hello everyone,
>>
>> I am submitting an R package to Bioconductor. I have 2 vignettes and the size is 8M and 2.3M respectively. BiocCheck requires the package size is within 4M, so I cannot pass the check.
>>
>> The vignette size is so large since it contains many png images. I have reduced the resolutions of the images and moved all images to github. In the Rmd file I inserted links to these images, but the resulting package size is 5.7M, still over 4M.
>>
>> Anyone has suggestions to resolve the package size issue?
>>
>> Thanks a lot!
>>
>> Regards
>>
>> 	[[alternative HTML version deleted]]
>>
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
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