[Bioc-devel] EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9

Hu, Qiang Q|@ng@Hu @end|ng |rom Ro@we||P@rk@org
Fri Apr 26 20:47:35 CEST 2019

Hi all,

Could you please help to check whether the required python package "cwltool" is installed and works in malbec2 and celaya2?

Here is part of the error log in malbec2:

$cwltool --version


pkg_resources.DistributionNotFound: The 'pyparsing' distribution was not found and is required by rdflib
It seems the cwltool doesn't work properly.

For elaya2, the required cwltool is not installed.


From: BBS-noreply using bioconductor.org <BBS-noreply using bioconductor.org>
Sent: Friday, April 26, 2019 2:16:38 PM
To: Hu, Qiang
Subject: EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9

[This is an automatically generated email. Please don't reply.]

Hi Rcwl maintainer,

According to the Multiple platform build/check report for BioC 3.9,
the Rcwl package has the following problem(s):

  o ERROR for 'R CMD INSTALL' on malbec2. See the details here:

  o ERROR for 'R CMD build' on malbec2. See the details here:

Please take the time to address this by committing and pushing
changes to your package at git.bioconductor.org


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