[Bioc-devel] EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9

[Hu, Qiang]

Hi all,


Could you please help to check whether the required python package "cwltool" is installed and works in malbec2 and celaya2?

Here is part of the error log in malbec2:

$cwltool --version

...

pkg_resources.DistributionNotFound: The 'pyparsing' distribution was not found and is required by rdflib
...
It seems the cwltool doesn't work properly.

For elaya2, the required cwltool is not installed.


Thanks,
Qiang


________________________________
From: BBS-noreply using bioconductor.org <BBS-noreply using bioconductor.org>
Sent: Friday, April 26, 2019 2:16:38 PM
To: Hu, Qiang
Subject: EXTERNAL: Rcwl problems reported in the Multiple platform build/check report for BioC 3.9

[This is an automatically generated email. Please don't reply.]

Hi Rcwl maintainer,

According to the Multiple platform build/check report for BioC 3.9,
the Rcwl package has the following problem(s):

  o ERROR for 'R CMD INSTALL' on malbec2. See the details here:
      https://master.bioconductor.org/checkResults/3.9/bioc-LATEST/Rcwl/malbec2-install.html

  o ERROR for 'R CMD build' on malbec2. See the details here:
      https://master.bioconductor.org/checkResults/3.9/bioc-LATEST/Rcwl/malbec2-buildsrc.html

Please take the time to address this by committing and pushing
changes to your package at git.bioconductor.org

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