[Bioc-devel] Final List of Deprecated Package Bioc 3.9

[Shepherd, Lori]

gCrisprTools has reached out and will no longer be deprecated


flowQB and flowQBData will be deprecated (note: user reached out to community and is willing to pass maintainership - if anyone is willing we will undeprecate)



Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
Sent: Monday, April 8, 2019 8:07:21 AM
To: bioc-devel
Subject: Re: [Bioc-devel] Final List of Deprecated Package Bioc 3.9

The following package will also be deprecated

NGScopy

spliceSites


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
Sent: Thursday, March 28, 2019 9:27:56 AM
To: bioc-devel
Subject: [Bioc-devel] Final List of Deprecated Package Bioc 3.9

The final list of deprecated packages for Bioc 3.9 is as follows:

Maintainer requested deprecation:

Software:

flowQ
miRsponge (renamed to miRspongeR)

Unresponsive/not-maintained packages:

Software:

ProCoNA
GOTHic
htSeqTools
rMAT
TSSi
gCrisprTools

Experiment Data Package:

PGPC


As the release deadlines approach (http://bioconductor.org/developers/release-schedule/)  , we will be sending emails out to packages that are broken across any platform in Bioconductor. We appreciate your timely response in fixing packages. Any package that has been warned, and is failing across ALL platforms will be up for immediate deprecation in devel 3.10. Thank you



Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


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