[Bioc-devel] Issue with an illegal version bump message when updating an old experiment data package

[Ramos Perez, Marcel]

Hi Leonardo,

Keep in mind that GitHub and the Bioconductor git server are two
different animals.

You should be pushing your changes to the git server as you would with
software
packages ( `git using git.bioconductor.org:packages/derfinderData` ).

My guess is that the hook is looking at the version already in the git
server and
comparing that to the committed changes (but I could be wrong).

Nitesh can elaborate a bit more on this.

We will look into it on our end.

Regards,

Marcel




On 09/24/2018 10:54 AM, Leonardo Collado Torres wrote:
> Hi,
>
> Marcel Ramos told me a few months ago (July 24, 2018) that experiment
> data packages are now controlled the same way as software packages via
> GitHub. Today I finally tried synching the repos following these
> instructions http://bioconductor.org/developers/how-to/git/sync-existing-repositories/.
> I had to use the "git merge --allow-unrelated-histories
> upstream/master" step and resolve 3 small conflicts. It's almost all
> working well, the step I'm stuck at is:
>
> $ git push upstream master
> Counting objects: 45, done.
> Delta compression using up to 4 threads.
> Compressing objects: 100% (38/38), done.
> Writing objects: 100% (45/45), 5.98 KiB | 1.50 MiB/s, done.
> Total 45 (delta 25), reused 5 (delta 4)
> remote: Error: Illegal version bump from '0.115.0' to '0.115.1'. Check
> remote: http://bioconductor.org/developers/how-to/version-numbering/
> remote: for details
> To git.bioconductor.org:packages/derfinderData.git
>  ! [remote rejected] master -> master (pre-receive hook declined)
> error: failed to push some refs to
> 'git using git.bioconductor.org:packages/derfinderData.git'
>
> My guess is that the hook is looking at
> https://github.com/leekgroup/derfinderData/commit/90971f8c8f6b4116d939309942a781bc5f55d9d8
> and thinks that I'm trying to bump from 0.103.1 to 0.115.1 while in
> reality the version at
> http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html
> is 0.115.0 (updated in
> https://github.com/leekgroup/derfinderData/commit/dbf71bbd4418be5a80a6060df8f5f16379a01cb3).
>
> Is there something I can do to make this work?
>
> GitHub: https://github.com/leekgroup/derfinderData
> Bioc-devel: http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html
>
> PS I guess that I don't need this file anymore:
> https://github.com/leekgroup/derfinderData/blob/master/external_data_store.txt
> nor the currently untracked svn files:
>
> $ git status
> On branch master
> Your branch is up to date with 'origin/master'.
>
> Untracked files:
>   (use "git add <file>..." to include in what will be committed)
>
> data/.svn/
> inst/extdata/.svn/
>
> Best,
> Leo
>
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