[Bioc-devel] Issue with an illegal version bump message when updating an old experiment data package

Ramos Perez, Marcel M@rcel@R@mo@Perez @ending from Ro@wellP@rk@org
Wed Sep 26 04:24:29 CEST 2018

Hi Leonardo,

Keep in mind that GitHub and the Bioconductor git server are two
different animals.

You should be pushing your changes to the git server as you would with
packages ( `git using git.bioconductor.org:packages/derfinderData` ).

My guess is that the hook is looking at the version already in the git
server and
comparing that to the committed changes (but I could be wrong).

Nitesh can elaborate a bit more on this.

We will look into it on our end.



On 09/24/2018 10:54 AM, Leonardo Collado Torres wrote:
> Hi,
> Marcel Ramos told me a few months ago (July 24, 2018) that experiment
> data packages are now controlled the same way as software packages via
> GitHub. Today I finally tried synching the repos following these
> instructions http://bioconductor.org/developers/how-to/git/sync-existing-repositories/.
> I had to use the "git merge --allow-unrelated-histories
> upstream/master" step and resolve 3 small conflicts. It's almost all
> working well, the step I'm stuck at is:
> $ git push upstream master
> Counting objects: 45, done.
> Delta compression using up to 4 threads.
> Compressing objects: 100% (38/38), done.
> Writing objects: 100% (45/45), 5.98 KiB | 1.50 MiB/s, done.
> Total 45 (delta 25), reused 5 (delta 4)
> remote: Error: Illegal version bump from '0.115.0' to '0.115.1'. Check
> remote: http://bioconductor.org/developers/how-to/version-numbering/
> remote: for details
> To git.bioconductor.org:packages/derfinderData.git
>  ! [remote rejected] master -> master (pre-receive hook declined)
> error: failed to push some refs to
> 'git using git.bioconductor.org:packages/derfinderData.git'
> My guess is that the hook is looking at
> https://github.com/leekgroup/derfinderData/commit/90971f8c8f6b4116d939309942a781bc5f55d9d8
> and thinks that I'm trying to bump from 0.103.1 to 0.115.1 while in
> reality the version at
> http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html
> is 0.115.0 (updated in
> https://github.com/leekgroup/derfinderData/commit/dbf71bbd4418be5a80a6060df8f5f16379a01cb3).
> Is there something I can do to make this work?
> GitHub: https://github.com/leekgroup/derfinderData
> Bioc-devel: http://bioconductor.org/packages/devel/data/experiment/html/derfinderData.html
> PS I guess that I don't need this file anymore:
> https://github.com/leekgroup/derfinderData/blob/master/external_data_store.txt
> nor the currently untracked svn files:
> $ git status
> On branch master
> Your branch is up to date with 'origin/master'.
> Untracked files:
>   (use "git add <file>..." to include in what will be committed)
> data/.svn/
> inst/extdata/.svn/
> Best,
> Leo
> _______________________________________________
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