[Bioc-devel] paxtoolsr Bioconductor Push Issues

Turaga, Nitesh Nite@h@Tur@g@ @ending from Ro@wellP@rk@org
Thu Sep 20 22:50:39 CEST 2018

Hi Augustin,

There is a software package size limit to Bioconductor packages which is 5 MB. You cannot push because the pre-receive hook on the Bioconductor git repo is catching that it’s a bad commit.

I guess you are making a change to the jar file for the first time after the git-hooks have been put in place(about 9-10 months ago) to make sure that packages are obeying the 5MB limit. Is this accurate? 



> On Sep 20, 2018, at 5:09 PM, Augustin Luna <augustin_luna using hms.harvard.edu> wrote:
> I've made needed changes to paxtoolsr for the next release. I cannot
> push to Bioconductor; see below. paxtoolsr is essentially a wrapper
> around the jar with helper functions; the jar has been there since the
> beginning. Please advise.
> Augustin Luna
> Writing objects: 100% (1252/1252), 22.33 MiB | 1.65 MiB/s, done.
> Total 1252 (delta 988), reused 741 (delta 596)
> remote: Resolving deltas: 100% (988/988), completed with 80 local objects.
> remote: Error: file larger than 5 Mb.
> remote:
> remote:     File name: 'inst/java/paxtools-4.3.1.jar'
> remote:     File size: 24.5 Mb
> remote:
> remote: Please see Biocondcutor guidelines
> remote: https://bioconductor.org/developers/package-guidelines/
> remote:
> To git.bioconductor.org:packages/paxtoolsr.git
> ! [remote rejected] master -> master (pre-receive hook declined)
> error: failed to push some refs to
> 'git using git.bioconductor.org:packages/paxtoolsr.git'
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