[Bioc-devel] Issue with 'configure' not being executable

Thomas Sherman t@herm@4 @ending from jhu@edu
Mon Oct 29 20:20:47 CET 2018

Forgot to add, the most recent version of the configure script is in the develop branch, since it was removed from the master branch.


From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Thomas Sherman <tsherma4 using jhu.edu>
Sent: Monday, October 29, 2018 3:15:28 PM
To: bioc-devel using r-project.org
Subject: [Bioc-devel] Issue with 'configure' not being executable


The latest build for our package (https://github.com/FertigLab/CoGAPS) failed with the error -

ERROR: 'configure' exists but is not executable -- see the 'R Installation and Administration Manual'

I've run into this before with our CI service, but the issue was fixed there by modifying TMPDIR based on the recommendation here: http://mazamascience.com/WorkingWithData/?p=1185 .

I'm not sure how to fix this issue for the bioconductor build system, so I've temporarily removed the configuration step.

Any help is much appreciated,


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