[Bioc-devel] Need update access agaisnt package 'banocc'

George Weingart george@weing@rt @ending from gm@il@com
Sat Oct 20 01:07:32 CEST 2018 

Could I trouble you to look at banocc 1.5.2 that I pushed: it has a
warning-
Is that ok or can we leave it like that to be released?

On Thu, Oct 18, 2018 at 7:21 AM Turaga, Nitesh <
Nitesh.Turaga using roswellpark.org> wrote:

> After a push is made it can take up to 48 hours for it to appear on the
> build report and landing pages - i.e. we do one pull, build, check,
> propagate in 24 hours - so if your commit was after the pull for the day it
> wont be until the following day
>
>
>
> > On Oct 18, 2018, at 10:03 AM, George Weingart <george.weingart using gmail.com>
> wrote:
> >
> > Hello,
> >
> > Seems I have been able to push successfully but I do not see the build
> report - Did I do something wrong or am I alooking at the wrong place?
> > See enclosed screen print
> >
> > Thanks for your help !
> >
> > Tanias-MacBook-Air:banocc georgeweingart$ git push origin master
> > Counting objects: 8, done.
> > Delta compression using up to 4 threads.
> > Compressing objects: 100% (8/8), done.
> > Writing objects: 100% (8/8), 1.02 KiB | 1.02 MiB/s, done.
> > Total 8 (delta 6), reused 0 (delta 0)
> > To git.bioconductor.org:packages/banocc
> >    756f013..9aee576  master -> master
> >
> >
> > On Thu, Oct 18, 2018 at 5:16 AM Turaga, Nitesh <
> Nitesh.Turaga using roswellpark.org> wrote:
> > > origin  git using git.bioconductor.org:packages/myPackage.git (fetch)
> > > origin  git using git.bioconductor.org:packages/myPackage.git (push)
> >
> >
> >
> > Typo in there, its “..org:packages/.."
> >
> > > On Oct 17, 2018, at 10:47 PM, Turaga, Nitesh
> <Nitesh.Turaga using RoswellPark.org> wrote:
> > >
> > > Your remotes should look like this,
> > >
> > > origin  git using git.bioconductor.org/packages/myPackage.git (fetch)
> > > origin  git using git.bioconductor.org/packages/myPackage.git (push)
> > >
> > > Access is through SSH protocol, not HTTPS.
> > >
> > >       • SSH (developer) read / write access: git using git.bioconductor.org
> > >       • HTTPS (public) read only access: https://git.bioconductor.org
> > >
> > >
> > > Please check http://bioconductor.org/developers/how-to/git/.
> > >
> > > Also, http://bioconductor.org/developers/how-to/git/faq/ (#13).
> > >
> > > Best,
> > >
> > > Nitesh
> > >
> > >
> > >> On Oct 17, 2018, at 9:57 PM, George Weingart <
> george.weingart using gmail.com> wrote:
> > >>
> > >> Hi,
> > >>
> > >> This is a follow up to Valerie’s response in regards to the
> permission to
> > >> update “banocc”
> > >>
> > >> I am still getting an error message when I am trying to push:
> > >>
> > >>
> > >> Tanias-MacBook-Air:banocc georgeweingart$ git push origin master
> > >>
> > >> fatal: remote error: FATAL: W any packages/banocc nobody DENIED by
> fallthru
> > >>
> > >> (or you mis-spelled the reponame)
> > >>
> > >>
> > >> Am I doing something wrong or am I still not permitted to update the
> > >> repository ?
> > >>
> > >> Thanks!
> > >>
> > >> George Weingart PhD
> > >>
> > >> Huttenhower Lab
> > >>
> > >> Harvard School of Public Health
> > >>
> > >>
> > >> DETAILS
> > >>
> > >> List of remotes
> > >>
> > >> Tanias-MacBook-Air:banocc georgeweingart$ git remote -v
> > >>
> > >> origin https://git.bioconductor.org/packages/banocc (fetch)
> > >>
> > >> origin https://git.bioconductor.org/packages/banocc (push)
> > >>
> > >> Log of the commits
> > >>
> > >> Tanias-MacBook-Air:banocc georgeweingart$ git log --oneline
> > >>
> > >> 9c411f9 (HEAD -> master) Modified DESCRIPTION to update contacts and
> added
> > >> parms to enable correct compile using C++11
> > >>
> > >> 756f013 (origin/master, origin/HEAD) replace BiocInstaller biocLite
> > >> mentions with BiocManager
> > >>
> > >> ef9422a bump x.y.z versions to odd y after creation of RELEASE_3_7
> branch
> > >>
> > >> d937c6d (origin/RELEASE_3_7) bump x.y.z versions to even y prior to
> > >> creation of RELEASE_3_7 branch
> > >>
> > >> 5cdd6e0 revert commit 63d51b83b60d6656930e0436a42cd606e5ef23b9
> > >>
> > >> 63d51b8 mark as unsupported on 32-bit windows; the builders only have
> > >> 64-bit pandoc
> > >>
> > >> 7b7f415 bump x.y.z versions to odd y after creation of RELEASE_3_6
> branch
> > >>
> > >> 40bc005 (origin/RELEASE_3_6) bump x.y.z versions to even y prior to
> > >> creation of RELEASE_3_6 branch
> > >>
> > >> b471035 bump x.y.z versions to odd y after creation of 3_5 branch
> > >>
> > >> e296cfc bump x.y.z versions to even y prior to creation of 3_5 branch
> > >>
> > >> 927028f Adding AnnotationFilter, NADfinder, GenomicDataCommons, RIVER,
> > >> BioMedR, banocc
> > >>
> > >>
> > >>
> > >>
> > >> Beginning of the extended log of the commits
> > >>
> > >> Tanias-MacBook-Air:banocc georgeweingart$ git log
> > >>
> > >> commit 9c411f9d62abf39cfc1a32cd888a412577463b5c (HEAD -> master)
> > >>
> > >> Author: George Weingart <george.weingart using gmail.com>
> > >>
> > >> Date:   Wed Oct 17 18:42:24 2018 -0700
> > >>
> > >>  Modified DESCRIPTION to update contacts and added parms to enable
> > >> correct compile using C++11
> > >>
> > >> commit 756f0130599144e9ec90e61e84f90a9cec307a94 (origin/master,
> origin/HEAD)
> > >>
> > >> Author: LiNk-NY <mramos09 using gmail.com>
> > >>
> > >> Date:   Tue Aug 28 18:51:28 2018 -0400
> > >>
> > >>  replace BiocInstaller biocLite mentions with BiocManager
> > >>
> > >> commit ef9422abd0d4e323268c9d807e0a094c9dd07dd6
> > >>
> > >> Author: vobencha <valerie.obenchain using roswellpark.org>
> > >>
> > >> Date:   Mon Apr 30 10:41:43 2018 -0400
> > >>
> > >>  bump x.y.z versions to odd y after creation of RELEASE_3_7 branch
> > >>
> > >> commit d937c6d2f55d92fd3fbcfa1226c65c260cd47387 (origin/RELEASE_3_7)
> > >>
> > >> Author: vobencha <valerie.obenchain using roswellpark.org>
> > >>
> > >> Date:   Mon Apr 30 10:35:46 2018 -0400
> > >>
> > >>  bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch
> > >>
> > >>
> > >> On Wed, Oct 17, 2018 at 12:21 PM Obenchain, Valerie <
> > >> Valerie.Obenchain using roswellpark.org> wrote:
> > >>
> > >>> Hi George,
> > >>>
> > >>> Thanks for letting us know - you should now have access.
> > >>>
> > >>> Valerie
> > >>>
> > >>>
> > >>> On 10/17/18 10:50 AM, George Weingart wrote:
> > >>>
> > >>> Hello,
> > >>>
> > >>> The package banocc has a build error - I was given the task to fix
> it and
> > >>> update the "Maintainer" information to include me and the head of
> our Lab,
> > >>> Prof. Curtis Huttenhower.
> > >>>
> > >>> The package was developed originally by Emma Schwager who has left
> our Lab.
> > >>>
> > >>> I cloned the package, made the necessary changes, ran a successful
> BUILD ,
> > >>> CHECK, BiocCheck and committed the changes and am ready to push the
> > >>> changes,  but I am getting a "permission denied" message - and
> indeed, I
> > >>> see in my profile I can update only ccrepe.
> > >>>
> > >>> I need update access against 'banocc"
> > >>>
> > >>> Thanks!
> > >>>
> > >>> George Weingart PhD
> > >>>
> > >>> Huttenhower Lab
> > >>>
> > >>> Harvard School of Public Health
> > >>>
> > >>>     [[alternative HTML version deleted]]
> > >>>
> > >>> _______________________________________________
> Bioc-devel using r-project.org mailing listhttps://
> stat.ethz.ch/mailman/listinfo/bioc-devel
> > >>>
> > >>>
> > >>>
> > >>> This email message may contain legally privileged and/or confidential
> > >>> information. If you are not the intended recipient(s), or the
> employee or
> > >>> agent responsible for the delivery of this message to the intended
> > >>> recipient(s), you are hereby notified that any disclosure, copying,
> > >>> distribution, or use of this email message is prohibited. If you have
> > >>> received this message in error, please notify the sender immediately
> by
> > >>> e-mail and delete this email message from your computer. Thank you.
> > >>
> > >>      [[alternative HTML version deleted]]
> > >>
> > >> _______________________________________________
> > >> Bioc-devel using r-project.org mailing list
> > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >
> > >
> > >
> > > This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
> > > _______________________________________________
> > > Bioc-devel using r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
> >
> >
> > This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
> > <Screen Shot 2018-10-18 at 7.02.44 AM.png>
>
>
>
> This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.

	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list