[Bioc-devel] Bioc 3.8 packages: if/while condition

[Obenchain, Valerie]

Sorry for the formatting mess. Trying again.

biovizBase,1.29.2
cbaf,1.3.5
CONFESS,1.9.0
DaMiRseq,1.5.2
fabia,2.27.0
flowViz,1.45.0
gaia,2.25.3
GateFinder,1.1.0
GenVisR,1.13.2
Guitar,1.19.0
hapFabia,1.23.0
KEGGlincs,1.7.3
Linnorm,2.5.0
MassArray,1.33.0
methylPipe,1.15.0
NOISeq,2.25.0
pathview,1.21.2
phyloseq,1.25.3
rHVDM,1.47.0
SEPA,1.11.0
seq2pathway,1.13.2
SPLINTER,1.7.2
SVAPLSseq,1.7.0
TFEA.ChIP,1.1.1
twilight,1.57.0






On 10/15/18 5:37 AM, Obenchain, Valerie wrote:

Developers,

The packages below execute an if() or while() statement on a condition with length greater than 1. This is currently a warning in R but will soon become an error.

Thanks to Tomas Kalibera for identifying packages that contain this error. If you maintain one of these please have a look at the output Tomas provides and check in a fix.

https://github.com/kalibera/rifcond/
https://github.com/kalibera/rifcond/tree/master/outputs_38

BIOC 3.8 packages:

biovizBase,1.29.2 cbaf,1.3.5 CONFESS,1.9.0 DaMiRseq,1.5.2 fabia,2.27.0 flowViz,1.45.0 gaia,2.25.3 GateFinder,1.1.0 GenVisR,1.13.2 Guitar,1.19.0 hapFabia,1.23.0 KEGGlincs,1.7.3 Linnorm,2.5.0 MassArray,1.33.0 methylPipe,1.15.0 NOISeq,2.25.0 pathview,1.21.2 phyloseq,1.25.3 rHVDM,1.47.0 SEPA,1.11.0 seq2pathway,1.13.2 SPLINTER,1.7.2 SVAPLSseq,1.7.0 TFEA.ChIP,1.1.1 twilight,1.57.0 Thanks. Valerie



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]