[Bioc-devel] cTRAP: WARNINGS in package submission

[Nuno Agostinho]

Dear all,

I am the developer of cTRAP <https://github.com/nuno-agostinho/cTRAP>, a package that I recently submitted for approval to Bioconductor: https://github.com/Bioconductor/Contributions/issues/906 <https://github.com/Bioconductor/Contributions/issues/906>. 

The package makes use of ENCODE and L1000 datasets downloaded from the web and the examples for such functions include downloading some sample files. However, this makes R CMD check take more than 5 minutes and labels my package with WARNING. Should I simply mark the examples of "slow" functions with \dontrun? I do not think that is the optimal approach, but it is certainly the easiest solution to pass the 5 minute requirement of R CMD check.

Thank you for your time!

Best regards,
Nuno Agostinho
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