[Bioc-devel] Update existing packages and change name
@@k@rioti@ @ending from @heffield@@c@uk
Tue May 22 11:46:53 CEST 2018
After lots of tries we decided to follow your second suggestion. How can we
stop the support for 32-bit windows?
On 22 March 2018 at 15:14, Hervé Pagès <hpages at fredhutch.org> wrote:
> Hi Sokratis,
> On 03/22/2018 06:13 AM, Sokratis Kariotis wrote:
>> Hey all,
>> I have been updating my pathprint and pathprintGeoData packages (in 3.7)
>> and I encountered the following error in one of them (only on windows
>> Error: cannot allocate vector of size 237.3 Mb
>> Here is the report: https://urldefense.proofpoint.
>> How can I fix this? Thanks in advance.
> Note that this error happens only when running the examples in 32-bit
> mode (arch i386) but not in 64-bit mode (arch x64). 32-bit Windows
> doesn't allow a process to use more than 2 Gb of RAM. There is no such
> limit with 64-bit Windows.
> You have 2 options: (1) reduce the memory footprint of the examples,
> or (2) give up on supporting your package for 32-bit Windows users.
> (2) should be the last resort.
>> On 21 February 2018 at 20:37, Obenchain, Valerie <
>> Valerie.Obenchain at roswellpark.org> wrote:
>> Hi Sokratis,
>>> Unfortunately you can't rename a package ... and there is no such thing
>>> a 'sub package'. Maybe you meant sub-package terms of dependencies. If
>>> have new data to add that's independent of what's in pathprintGEOData you
>>> can create a new data package.
>>> I'm not sure what you mean by 'considerably more data'. The
>>> pathprintGEOData package is currently 22MG:
>>> ~ >du -h pathprintGEOData_1.4.0.tar.gz
>>> 22M pathprintGEOData_1.4.0.tar.gz
>>> We don't support git LFS yet in the experimental data repo. If you plan
>>> making the package(s) very large we should consider making a
>>> package where the data can be stored in S3.
>>> On 02/21/2018 05:16 AM, Sokratis Kariotis wrote:
>>> Hey all, I am updating 2 of my packages (pathprint & pathprintGEOData)
>>> considerably more data and a few code updates. I also want to change the
>>> name of the data package to reflect the new content. Can the package name
>>> be changed or do I have to create new sub-packages? Thanks in advance.
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> Hervé Pagès
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
> E-mail: hpages at fredhutch.org
> Phone: (206) 667-5791
> Fax: (206) 667-1319
Sheffield Institute for Translational Neuroscience
385a Glossop Rd, Sheffield, S10 2HQ
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