[Bioc-devel] Access rights to data packages

[Shepherd, Lori]

Okay thank you.   we will work on getting the new version up.  sorry for the confusion.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Nuno Agostinho <nunodanielagostinho at gmail.com>
Sent: Monday, May 21, 2018 9:29:23 AM
To: Shepherd, Lori
Cc: bioc-devel at r-project.org
Subject: Re: Access rights to data packages

Hey Lori,

I cloned the package from GitHub and I run R CMD build, resulting in an tar.gz file. I also tried to run R CMD check on this file, yet it printed the following error:

* using R version 3.5.0 (2018-04-23)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* checking for file �alternativeSplicingEvents.hg38/DESCRIPTION� ... OK
* checking extension type ... ERROR
Extensions with Type �Annotation package� cannot be checked.
* DONE
Status: 1 ERROR

>From the output, it seems the Annotation package is not expected to be checked. What do you think? Anyway, I attached the tar.gz file (the output from R CMD build) you asked for.

Regarding the other package, I do not need to update it right now, I just ask permission to modify in case I needed to do so in the future.

If you need anything else from my part, ask away. Thank you!

Cheers,
Nuno


On 21 May 2018, at 13:49, Shepherd, Lori <Lori.Shepherd at RoswellPark.org<mailto:Lori.Shepherd at RoswellPark.org>> wrote:

Hi Nuno,

Sorry for the confusion -   Your two packages are actually annotation packages which are not in the git server.

To modify these packages please build and check your package locally and then send us the tar.gz file.  We will take care of updating the package[s] for you.

Cheers,

Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Nuno Agostinho <nunodanielagostinho at gmail.com<mailto:nunodanielagostinho at gmail.com>>
Sent: Monday, May 21, 2018 6:18:53 AM
To: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>
Cc: Shepherd, Lori
Subject: Access rights to data packages

Dear all,

I have access rights to modify a Bioconductor software package of mine, as per the information in https://git.bioconductor.org/BiocCredentials/ for the e-mail nunodanielagostinho at gmail.com<mailto:nunodanielagostinho at gmail.com>. However, I would also like to have access rights to my Bioconductor data packages (alternativeSplicingEvents.hg19 and alternativeSplicingEvents.hg38). Could you please grant me access to modify those packages?

Thank you for your time.

Cheers,
Nuno Agostinho

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