[Bioc-devel] Vignette warnings/errors

[Kenneth Condon]

Hi all,

I'm hoping to submit my package soon. But I am having issues with the
vignette.

R CMD check results0 errors | 1 warning  | 0 noteschecking files in
‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘UserGuide.Rmd’, ‘UserGuide.html’, ‘images/benchmark.png’,
    ‘images/workflow.png’
Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/UserGuide.Rmd’
(Is a VignetteBuilder field missing?)


BiocCheck FAILED.$error
[1] "VignetteBuilder listed in DESCRIPTION but not found as
VignetteEngine in any vignettes:"



My DESCRIPTION contains:
RoxygenNote: 6.0.1
Suggests: knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr

My directory tree looks as follows (note there is no inst/doc/ folder):
data/
man/
R/
tests/testthat/
vignettes/images/

Contents of vignettes/:
images/benchmark.png

images/workflow.png

UserGuide.Rmd # created with use_vignette('UserGuide', pkg =
myNewPackageName)
Userguide.html # created successfully with knitr button in Rstudio


Can someone instruct me what I am missing?

Regards,
Kenneth

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