[Bioc-devel] vignette problems

[campos]

Dear bioc-devel team,

I have made some changes in the package STAN and although it seems to 
install correctly, I have problems with timeout and error in windows... 
Could someone help me to improve the time?

https://bioconductor.org/checkResults/3.7/bioc-LATEST/STAN/

Best,

Rafael


On 28.03.2018 01:08, Martin Morgan wrote:
> When I try and install the version on the master branch of the 
> Bioconductor git repository I get
>
> STAN master$ Rdev --vanilla CMD INSTALL .
> * installing to library ‘/home/mtmorgan/R/x86_64-pc-linux-gnu-library
> ...
> ** testing if installed package can be loaded
> Error: package or namespace load failed for 'STAN' in 
> namespaceExport(ns, exports):
>  undefined exports: viterbi2Gviz
>
>
> This comes about in a rather interesting way because the body of 
> plotViterbi is not defined
>
> plotViterbi <- function(viterbi, regions, gen, chrom, from, to, 
> statecols, col)
>
> #'
> ...
>
> Can you please commit a version of the package that installs?
>
> Martin
>
> On 03/27/2018 06:42 PM, campos wrote:
>> Dear bioc-devel team,
>>
>> I am developing the STAN packages and I am running into problems when 
>> trying to build my package. The problem is the following:
>>
>> Error in vignette_type(Outfile) :
>>    Vignette product 'STAN.tex' does not have a known filename 
>> extension ('NA')
>> ERROR: installing vignettes failed
>> * removing '/tmp/Rtmp925Iru/Rinst63471ff1efdc/STAN'
>> I tried to build the package in old versions (which they used to 
>> work) and I run in other problems but in this case is:
>>
>> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = 
>> quiet,  :
>>    Running 'texi2dvi' on 'STAN.tex' failed.
>> LaTeX errors:
>> ! LaTeX Error: File `beramono.sty' not found.
>>
>> Type X to quit or <RETURN> to proceed,
>> or enter new name. (Default extension: sty)
>>
>> Could you help me with this problem?
>>
>> Thank you very much,
>>
>> Rafael
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
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