[Bioc-devel] git push denied

Turaga, Nitesh Nitesh.Turaga at RoswellPark.org
Tue Mar 20 20:30:20 CET 2018


Hi Laurent,

You cannot force push. Is you GitHub repo at a position where it needs to be synced to the Bioconductor repo?

If so, I can force push for you and sync.

Best,

Nitesh 

> On Mar 20, 2018, at 10:36 AM, Laurent Gatto <lg390 at cam.ac.uk> wrote:
> 
> 
> On 20 March 2018 01:58, Turaga, Nitesh wrote:
> 
>> Hi Laurent,
>> 
>> Are you sure you are using either of the private keys associated with
>> these public keys? You have to make sure to use the correct private
>> key.
> 
> Yes, I checked, and the keys are correct. Here's what I get in a cleanly
> cloned and fetched repo
> 
> $ git push upstream master
> To git at git.bioconductor.org:packages/pRolocdata.git
> ! [rejected]        master -> master (non-fast-forward)
> error: failed to push some refs to 'git at git.bioconductor.org:packages/pRolocdata.git'
> hint: Updates were rejected because a pushed branch tip is behind its remote
> hint: counterpart. Check out this branch and integrate the remote changes
> hint: (e.g. 'git pull ...') before pushing again.
> hint: See the 'Note about fast-forwards' in 'git push --help' for details.
> $ git push -f upstream master
> Counting objects: 1671, done.
> Delta compression using up to 4 threads.
> Compressing objects: 100% (684/684), done.
> Writing objects: 100% (1482/1482), 75.96 MiB | 329.00 KiB/s, done.
> Total 1482 (delta 822), reused 1455 (delta 795)
> remote: Resolving deltas: 100% (822/822), completed with 83 local objects.
> remote: FATAL: + refs/heads/master packages/pRolocdata l.gatto DENIED by fallthru
> remote: error: hook declined to update refs/heads/master
> To git at git.bioconductor.org:packages/pRolocdata.git
> ! [remote rejected] master -> master (hook declined)
> error: failed to push some refs to 'git at git.bioconductor.org:packages/pRolocdata.git'
> 
> Could it be related to the external storage devices, were the data and
> inst/extdata are (used to?) be stores independently? Is this still the
> case? I cloned directly from
> 
>  git at git.bioconductor.org:packages/pRolocdata.git
> 
> and these two directories are missing.
> 
> Laurent
> 
>> ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQDW56mKIG/pkMMXmkNAgMC1Obx8Tz4D2OAnmkQNBM98NftJeerOCoIvg+7Dqh/PGnDpwIDwW9qMhvq5IalHXr+o0/XB1upPl9J0Xj2XixGpG7HzXBNpCe5cEZlJHllAh8tWXbjTZ+he2ESs+vbD3EQY4x+A2ibfTzne58oQbHAUNw7o32jsfuAzJPmoPyEOUVR+PXczy3qJdsWngEFUIPEOM52AcvRKyXZ3WfgEHs1IvlOTIix4WS4FWbZVCExpwn4RIuVY3ZuW7CQ2DwrgT94mvknTGTU7/7Mr1KiS8nY0ItJN5Vm/HbVVzzXjGr/SF00VJh6m8+caF4Fh0YtKOiTF
>> 
>> 
>> ssh-rsa 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
>> 
>> 
>> (How to check if key pair matches:  https://serverfault.com/questions/426394/how-to-check-if-a-rsa-public-private-key-pair-matched)
>> 
>> Also check point #15 on http://bioconductor.org/developers/how-to/git/faq/.
>> 
>> 
>> Best,
>> 
>> Nitesh
>> 
>>> On Mar 19, 2018, at 8:17 PM, Laurent Gatto <lg390 at cam.ac.uk> wrote:
>>> 
>>> 
>>> Dear Bioconductor admins,
>>> 
>>> I tried to push to a data package to the Bioconductor git server,
>>> leading to the following error
>>> 
>>> Counting objects: 1671, done.
>>> Delta compression using up to 4 threads.
>>> Compressing objects: 100% (1324/1324), done.
>>> Writing objects: 100% (1482/1482), 76.14 MiB | 411.00 KiB/s, done.
>>> Total 1482 (delta 832), reused 159 (delta 155)
>>> remote: Resolving deltas: 100% (832/832), completed with 74 local objects.
>>> remote: FATAL: + refs/heads/master packages/pRolocdata l.gatto DENIED by fallthru
>>> remote: error: hook declined to update refs/heads/master
>>> To git at git.bioconductor.org:packages/pRolocdata.git
>>> ! [remote rejected] master -> master (hook declined)
>>> error: failed to push some refs to 'git at git.bioconductor.org:packages/pRolocdata.git'
>>> 
>>> The github repo is at https://github.com/lgatto/pRolocdata, in case this
>>> is important.
>>> 
>>> Is this something I messed up or could it be a configuration issue?
>>> 
>>> Thank you in advance.
>>> 
>>> Best wishes,
>>> 
>>> Laurent
>>> 
>>> --
>>> Laurent Gatto | @lgatt0
>>> http://cpu.sysbiol.cam.ac.uk/
>>> http://lgatto.github.io/
>>> 
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
>> 
>> 
>> This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
> 
> 
> --
> Laurent Gatto | @lgatt0
> http://cpu.sysbiol.cam.ac.uk/
> http://lgatto.github.io/



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