[Bioc-devel] List of Deprecated Packages for Bioc3.7

[Shepherd, Lori]

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.

The current list of deprecated packages is as follows:




Maintainer requested deprecation:

Software Package:

ontoCAT

spliceR (functionalities moved to IsoformSwitchAnalyzeR)

mvGST




Experiment Data Package:

RnaSeqTutorial

cheung2010

MEALData (replaced with brgedata)






Unresponsive/not-maintained packages:

Software:

GMRP

MBttest

OperaMate

ToPASeq

DASC

RamiGO

htSeqTools

PAnnBuilder

DMRScan

XBSeq



ToPASeq has transitioned to a new maintainer so this expect this to come out of deprecation before the release.

We did not announce that the following is also no longer available
Experiment Data Package: IlluminaHumanMethylation450k.db




Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


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