[Bioc-devel] Duplicate commits in mimager package

[Turaga, Nitesh]

Hi Aaron,

As Johannes said, your have to fix the repo yourself.

Your duplicate commits are non-contiguous which is surprising. It’s almost as if the commit dates were changed somehow. 

Once you fix the repo on Github, please send me the link and I can force push to Bioconductor. 

Best,

Nitesh 

> On Mar 7, 2018, at 1:24 PM, Aaron Wolen <aaron at wolen.com> wrote:
> 
> Thanks for the information, Jo. Sounds like a very similar issue—even down to the potentially faulty git-svn setup. Glad to hear Nitesh was able to copy over your cleaned history to Bioconductor. Hopefully we can do the same for mimamger. 
> 
> 
> On Mar 7, 2018, 1:26 AM -0500, Rainer Johannes <Johannes.Rainer at eurac.edu>, wrote:
>> I recently had a similar problem with my FamAgg and ensembldb packages. I had to remove the duplicated commits with `git rebase -i <sha from last non-duplicated commit>` (i.e. interactive rebasing). During/after that I had to fix some merge conflicts and ended overwriting my github master with the cleaned history (`git push -f origin master`) - Nithesh replaced then the Bioconductor git repos with the fixed github masters.
>> 
>> I think the duplicated commits are leftovers from my (potentially faulty) git-svn setup.
>> 
>> cheers, jo
>> 
>>> On 6 Mar 2018, at 21:41, Aaron Wolen <aaron at wolen.com> wrote:
>>> 
>>> Thanks, Nitesh, There are about 20 dupes. Here are a few examples:
>>> 
>>> - 2c01b08 and c0f7ed1
>>> - 77a5d90 and 464edd9
>>> - b952032 and 9abf5dd
>>> 
>>> On Mar 6, 2018, 1:27 PM -0500, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>, wrote:
>>>> Hi Aaron,
>>>> 
>>>> You cannot force push to the Bioconductor server as it is prevented by a pre-receive hook on our end.
>>>> 
>>>> There are no duplicate commits on the Bioconductor version of the package right now. Can you point the commits which are duplicated on a fresh clone of the mimager package from git.bioconductor.org?
>>>> 
>>>> 
>>>> 
>>>> Best,
>>>> 
>>>> Nitesh
>>>> 
>>>>> On Mar 6, 2018, at 12:23 PM, Aaron Wolen <aaron at wolen.com> wrote:
>>>>> 
>>>>> Hi all,
>>>>> 
>>>>> I attempted syncing my existing GitHub repo for the mimager package with git.bioconductor.org and was left with many duplicate commits, as documented.
>>>>> 
>>>>> Hoping to keep my history intact, I performed a rebase to clean-up the dupes (giving preference to commits with git-svn-ids) but can’t force push these changes upstream to Bioconductor. Would it be possible to update the Bioconductor history to match what’s on GitHub (https://github.com/aaronwolen/mimager), similar to what was done for the ASSIGN package?
>>>>> 
>>>>> Thanks,
>>>>> Aaron
>>>>> 
>>>>> [[alternative HTML version deleted]]
>>>>> 
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