[Bioc-devel] Git error when pushing to bioconductor

[Turaga, Nitesh]

Hi Divy,


Can you send me the output of your  
	
	git status

	git remote -v

Best,

Nitesh

> On Jun 4, 2018, at 12:50 PM, Kangeyan, Divy <divyswar01 using g.harvard.edu> wrote:
> 
> Hi Nitesh,
>                I followed the resolve merge conflict article you provided step by step. There was no error until I got to the last step of pushing the changes to the upstream. When I tried pushing it to the upstream branch I got the same error. I have attached the branch history of upstream and origin here. It seems both branches diverged on 05-19-2018. Is it possible to merge the branches in some other way? 
> 
> Thank you,
> Divy
> 
> On Mon, Jun 4, 2018 at 8:10 AM, Turaga, Nitesh <Nitesh.Turaga using roswellpark.org> wrote:
> Hi Divy,
> 
> It might be possible that you did not resolve all the conflicts you have.
> 
> Generally, a `git status` will show you all the conflict  files which are needed to be cleaned up by the merge. When you do a clean conflict resolution, you will be able to push cleanly to git.bioconductor.org. 
> 
> Did you follow http://bioconductor.org/developers/how-to/git/resolve-conflicts/?
> 
> Please send me the output of following that document above.
> 
> Best
> 
> Nitesh
> 
> 
> 
> > On Jun 3, 2018, at 10:55 PM, Kangeyan, Divy <divyswar01 using g.harvard.edu> wrote:
> > 
> > Hi Lori,
> >            When I try Git pull upstream master, I get an error saying
> > *Automatic
> > merge failed; fix conflicts and then commit results*. When I fix the
> > conflict and push it I get the same error as in my previous email. I have
> > attached the full error message when I pull the upstream master branch here.
> > 
> > Thank you,
> > Divy
> > 
> > On Sun, Jun 3, 2018 at 9:28 PM, Shepherd, Lori <
> > Lori.Shepherd using roswellpark.org> wrote:
> > 
> >> Have you tried doing a 'git pull upstream master' ?  Do you get any
> >> messages when running that command?
> >> 
> >> Generally try the following and post any error messages:
> >> Git pull upstream master
> >> ( resolve any merge conflicts and commit )
> >> ( make any additional changes and commit)
> >> Git push upstream master
> >> 
> >> 
> >> Lori Shepherd
> >> Bioconductor Core Team
> >> Roswell Park Cancer Institute
> >> Department of Biostatistics & Bioinformatics
> >> Elm & Carlton Streets
> >> Buffalo, New York 14263
> >> ------------------------------
> >> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of
> >> Kangeyan, Divy <divyswar01 using g.harvard.edu>
> >> *Sent:* Sunday, June 3, 2018 4:07:48 PM
> >> *To:* Bioc-devel using r-project.org
> >> *Subject:* [Bioc-devel] Git error when pushing to bioconductor
> >> 
> >> Hi,
> >>    I maintain the scmeth package in bioconductor. Recently I made some
> >> changes to the packages in my local branch and when I tried pushing it to
> >> the bioconductor I got an error saying (Updates were rejected because the
> >> tip of your current branch is behind its remote counterpart). I have
> >> attached the screenshot.
> >> 
> >> I tried resolving the conflict manually and after that when I pushed the
> >> changes I still got the same error. Any help with resolving the error is
> >> greatly appreciated.
> >> 
> >> Thank you,
> >> Divy Kangeyan
> >> 
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> > 
> > 
> > 
> > 
> > -- 
> > Thank you,
> > Divy Kangeyan
> > <https://www.linkedin.com/profile/preview?vpa=pub&locale=en_US>
> > <https://divyup.wordpress.com>  <https://www.flickr.com/photos/divyagash/>
> > <git_pull_error.png>_______________________________________________
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> 
> 
> 
> This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
> 
> 
> 
> -- 
> Thank you,
> Divy Kangeyan  
> <upstream_master_branch_history.png><origin_master_branch_history.png>



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.