[Bioc-devel] error in loading pbdMPI on tokay2

Obenchain, Valerie Valerie.Obenchain at RoswellPark.org
Wed Jan 31 20:37:13 CET 2018

Hi Armen,

MPI is not installed on the Windows builders so pbdMPI is not supported. Was there a specific reason you chose pbdMPI? There are several other options for parallel evaluation which are supported across all 3 platforms, e.g., BiocParallel, doParallel and batchtools.

I took a brief look at what naddaR is importing from pdbMPI and didn't see anything unusual - I believe you can find all functionality in one of the alternatives. Please have a look and let us know if one of these will work for you.


On 01/27/2018 12:35 PM, Armen Abnousi wrote:


I'm submitting a package for build, but for windows it goes to tokay2 and
fails during the build with the following message:


* checking for file 'naddaR/DESCRIPTION' ... OK
* preparing 'naddaR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* installing *source* package 'naddaR' ...
** R
** inst
** preparing package for lazy loading
Error : .onLoad failed in loadNamespace() for 'pbdMPI', details:
  call: inDL(x, as.logical(local), as.logical(now), ...)
  error: unable to load shared object
  LoadLibrary failure:  The specified module could not be found.

ERROR: lazy loading failed for package 'naddaR'
* removing 'C:/Users/pkgbuild/AppData/Local/Temp/Rtmp4kcgED/Rinst1ffc2775216d/naddaR'
ERROR: package installation failed


How can I change this? It builds for Linux and Mac on Merida2 and Malbec2.


        [[alternative HTML version deleted]]

Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list