[Bioc-devel] NanoStringDiff package update

[Zhai, Tingting]

Hi Lori and Morgan,
I am taking the "Maintain a Bioconductor-only repository tutorial". I'm
done with "Push your local commits to the *Bioconductor* repository" so
far. So what next I should do to make my new package available to the user
community?
I guess I need to do the next step "Merge changes to the current release
branch", but I don't know my current release branch.
Could you all help me out?

Thank you!
Best wishes,
Tingting

On Thu, Jan 25, 2018 at 9:58 AM, Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:

> Sorry for the delay.  Please try again. We have just processed the keys
> again and it should be accessible.  If you continue to have issues please
> reply all so that it stays on the devel mailing list thread and other
> members of the team can also assist.
>
>
> Cheers
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Zhai, Tingting <tingting.zhai at uky.edu>
> *Sent:* Thursday, January 25, 2018 9:49:47 AM
> *To:* Shepherd, Lori
> *Subject:* Re: [Bioc-devel] NanoStringDiff package update
>
> Hi Lori,
> You are so helpful! I really appreciate it!
> I submitted the form you mentioned above two days ago (Jan. 23). But when
> I run "git clone git at git.bioconductor.org:packages/NanoStringDiff.git", I
> still get the error that "Permission denied (publickey).
> fatal: Could not read from remote repository." Does it mean that my key
> has not been added to your system?
>
> Thank you again for your help.
>
>
> Best wishes,
> Tingting
>
>
>
>
> On Thu, Jan 25, 2018 at 7:13 AM, Shepherd, Lori <
> Lori.Shepherd at roswellpark.org> wrote:
>
> Bioconductor has switched from svn to git, and was announced back in
> August 2017, so you are correct that you are no longer able to use svn to
> upload changes to the new location for the Bioconductor repository
>
>
> git.bioconductor.org
>
>
> You don't have to use github to maintain your package locally (we do
> recommend it but not necessary) but we do require git for maintaining the
> Bioconductor canonical location.  There are lots of scenarios and useful
> FAQ section on the Bioconductor website
>
>
> http://bioconductor.org/developers/how-to/git/
>
>
> Create a new GitHub repository tutorial - will take you through how to
> convert an existing directory onto github and how to maintain the two
> locations (local github and bioconductor git location)
>
>
> Maintain a Bioconductor-only repository  tutorial - will take you through
> how to link to the Bioconductor git.bioconductor.org repository without
> creating a github.
>
>
> There are many tutorials with how to push changes and how to pull from the
> Bioconductor repo (after a release happens this is necessary) and how to
> trouble shoot common issues.
>
>
> The first step will be to submit an id and ssh-key to the following form
> to gain access to the package
>
>
> https://docs.google.com/forms/d/1CCwUhjtG82rnmcTWYqY43WcmBx5
> YyQm5UD4pcs1dhEs/viewform?edit_requested=true
>
>
> You will need to enter your email -  because you had an svn account your
> svn.id - and a ssh public key -
>
>
> Cheers,
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Zhai,
> Tingting <tingting.zhai at uky.edu>
> *Sent:* Wednesday, January 24, 2018 2:17:17 PM
> *To:* bioc-devel at r-project.org
> *Subject:* [Bioc-devel] NanoStringDiff package update
>
> I’m one of the maintainers of NanoStringDiff package on Bioconductor. Now I
> want to update this package and add some useful functions. I’m using SVN,
> but when committing, it gives me this error: The new canonical location for
> Bioconductor software and
>
> data experiment packages is git.bioconductor.org
>
>
> The recommended way to maintain your Bioconductor software
>
> or data experiment package is to use GitHub.
>
>
>
> Does this mean I’m not able to use SVN to maintain my package any more? I’m
> not familiar with github.
>
>
> Thank you very much for any help in advance.
>
>
> Best wishes,
>
> Tingting
>
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