[Bioc-devel] Permission denied when fetching from BioC GitHub repository

[Turaga, Nitesh]

Hi 

Only packages maintained by Bioconductor are at that location gitHub.com/Bioconductor.  Your package is not maintained by the core-team in Bioconductor, so, it does not belong in that location.

We follow the same process as all the maintainers, we have a Github repo to take advantage of the social coding practices, and the canonical Bioconductor git server which acts as the central server for bioconductor packages.

I hope this answers your question.

Best,

Nitesh 

> On Jan 24, 2018, at 11:24 AM, Federico C <federico.comoglio at gmail.com> wrote:
> 
> Hi Valerie,
> 
> the ssh key has now been setup and it works. I had some issues with merging but at the end I decided to force BioC master to GitHub master (following https://bioconductor.org/developers/how-to/git/abandon-changes/#force-bioconductor--to-github- <https://bioconductor.org/developers/how-to/git/abandon-changes/#force-bioconductor--to-github->). Afterwards, I pushed the bug fix to both origin and upstream remotes (master branch). Indeed:
> 
> | => git status
> On branch master
> Your branch is up-to-date with 'upstream/master'.
> 
> nothing to commit, working tree clean
> 
> However, shouldn’t wavClusteR be listed at https://github.com/Bioconductor <https://github.com/Bioconductor> at this point?
> 
> Thanks a lot for your help.
> Best wishes,
> 
> Federico
> 
> 
> 
> 
> 
>> On 23 Jan 2018, at 20:50, Federico C <federico.comoglio at gmail.com> wrote:
>> 
>> Hi Valerie,
>> 
>> done. Thanks a lot,
>> 
>> Federico
>> 
>>> On 23 Jan 2018, at 20:18, Obenchain, Valerie <Valerie.Obenchain at RoswellPark.org <mailto:Valerie.Obenchain at RoswellPark.org>> wrote:
>>> 
>>> Hi Federico,
>>> 
>>> We don't have an ssh key on file for you. Please add one by following instructions at the link below and use the ID of 'f.comoglio':
>>> 
>>> https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform <https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform>
>>> 
>>> You will get an email in the next 24 hours if the submission was successful.
>>> 
>>> Valerie
>>> 
>>> On 01/23/2018 09:47 AM, Federico C wrote:
>>>> Dear all,
>>>> 
>>>> I’m trying to push a bug fix for wavClusteR to the BioC GitHub repository. I currently pushed the latest package version to the devel and master branch of my GitHub repository (https://github.com/FedericoComoglio/wavClusteR <https://github.com/FedericoComoglio/wavClusteR> <https://github.com/FedericoComoglio/wavClusteR> <https://github.com/FedericoComoglio/wavClusteR>).
>>>> 
>>>> To sync these changes with the bioC GitHub repository, I have followed the documentation at https://bioconductor.org/developers/how-to/git/ <https://bioconductor.org/developers/how-to/git/> <https://bioconductor.org/developers/how-to/git/> <https://bioconductor.org/developers/how-to/git/> . However, even though I added an upstream remote to my repository and added a public key as described, when I fetch updates from all (see https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ <https://bioconductor.org/developers/how-to/git/sync-existing-repositories/> <https://bioconductor.org/developers/how-to/git/sync-existing-repositories/> <https://bioconductor.org/developers/how-to/git/sync-existing-repositories/>) I get
>>>> 
>>>> | => git fetch --all
>>>> Fetching origin
>>>> Fetching upstream
>>>> git at git.bioconductor.org <mailto:git at git.bioconductor.org> <mailto:git at git.bioconductor.org> <mailto:git at git.bioconductor.org>: Permission denied (publickey).
>>>> fatal: Could not read from remote repository.
>>>> 
>>>> Please make sure you have the correct access rights
>>>> and the repository exists.
>>>> error: Could not fetch upstream
>>>> 
>>>> Could you please help me with this issue?
>>>> 
>>>> Thanks a lot for your time and patience.
>>>> 
>>>> Best wishes,
>>>> Federico
>>>> 	[[alternative HTML version deleted]]
>>>> 
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>>> 
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> 
> 
> 	[[alternative HTML version deleted]]
> 
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